PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g09370.2
Common NameLOC4340382, Os06g0193400, OsJ_20430, OSNPB_060193400, P0698A06.26-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 479aa    MW: 50725.8 Da    PI: 5.0033
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g09370.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.14.8e-11327372555
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       h+++Er RR++i +++ +L+ l+P++      K +Ka++L + ++Y+k Lq
  LOC_Os06g09370.2 327 HSIAERLRREKISERMKNLQVLVPNS-----NKADKASMLDEIIDYVKFLQ 372
                       99***********************7.....5******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.36E-16320382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.65E-12320376No hitNo description
PROSITE profilePS5088816.666322371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.7E-16324381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-8327372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.1E-13328377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009066anatomyanther
PO:0001004developmental stageanther development stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MDYSAGSYMW PGNSGSENYN FVDGSSESYA EEGSLPPSGY FMGAGSDRSL KITENERNPT  60
MLANGCLPYN TQAHPLSGQI LPKGELPNNL LDLQQLQNSS NLRSNSIPPG VLQCNSTSGT  120
FDAKLDTPGL AELPHALSSS IDSNGSDISA FLADVHAVSS APTLCSAFQN VSSFMEPVNL  180
DAFGFQGAQN VAMLNKTSLP NGNPSLFDNA AIASLHDSKE FLNGGSIPSF GTVLQALGAG  240
GLKAAQQEQN IRNIPLPTFT SGSHLAVTDA QGPPLPSKIP PLIHDHNSEY PINHSSDVEP  300
QANSAPGNSA NAKPRTRARR GQATDPHSIA ERLRREKISE RMKNLQVLVP NSNKADKASM  360
LDEIIDYVKF LQLQVKVLSM SRLGAPGAVL PLLRESQTEC HSNPSLSAST ISQGPPDMPD  420
SEDSSAFEQE VVKLMETSII SAMQYLQNKG LCLMPIALAS AISNQKGMAA AAAIPPEK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.87900.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329756850.0
Expression AtlasQ69Y52-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g09370.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g09370
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0656670.0AK065667.1 Oryza sativa Japonica Group cDNA clone:J013042L14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644033.10.0PREDICTED: transcription factor SPATULA isoform X1
RefseqXP_015644031.10.0PREDICTED: transcription factor SPATULA isoform X1
TrEMBLQ69Y520.0Q69Y52_ORYSJ; BHLH transcription factor PTF1
STRINGLOC_Os06g09370.10.0(Oryza sativa Japonica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.14e-56LJRHL1-like 3