PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g08500.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 368aa    MW: 36464.4 Da    PI: 5.1952
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g08500.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.45.9e-091682071155
                       HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  LOC_Os06g08500.1 168 LRRERIAERMKSLQELVPNA-----NKTDKASMLDEIIDYVKFLQ 207
                       6******************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.04157206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-7167212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-12167216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-6168207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.81E-13168227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.31E-9169211No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MQPSSRDTVA GGGGEGTQDD FFDQMLSTLP SAWADLGGGG GGAAGKSPWE VDPAAAAAAS  60
QVFDESALLA SRLRHHQIGG AGGGGGEKPV MLQLSELHRQ AGGGEEDGSG AFSPLPLFTD  120
RTNVPPREEM EGGFKSPNAA AGGEHALFNG FGVHGGSGGA GQPPFGQLRR ERIAERMKSL  180
QELVPNANKT DKASMLDEII DYVKFLQLQV KVLSMSRLGG AAGMAPLVAS MSSEGNSNGS  240
SNGGGGKASK GGTGGEGGGG GGGGGGGGTG GGMRVTEQQV AKMMEEDMGT AMQYLQGKGL  300
CLMPISLASA ISSATSSASL LSRPSIRHAG APPQTMLDAA GPTSPAAMSN GDDPRHAKAD  360
GGAGGTQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1252268TGGEGGGGGGGGGGGGT
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g08500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g08500
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankAP0059190.0AP005919.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0554A06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642979.11e-180PREDICTED: transcription factor bHLH66-like
SwissprotQ9LSQ31e-58BH082_ARATH; Transcription factor bHLH82
TrEMBLA0A0P0WTJ80.0A0A0P0WTJ8_ORYSJ; Os06g0184000 protein
STRINGLOC_Os06g08500.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5816313
MonocotsOGMP141937118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.14e-43LJRHL1-like 2