PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g06360.1
Common NameLOC4340188, Os06g0158100, OSNPB_060158100, P0046E09.34, P0702F05.14
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 392aa    MW: 41403.5 Da    PI: 6.1909
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g06360.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.43.1e-28144204259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                       dDg++WrKYGqK++ g++fpr+YYrCt++   gCp++k+v+rs+ d  v+++tY+g H+++
  LOC_Os06g06360.1 144 DDGFSWRKYGQKDILGAKFPRGYYRCTYRnaqGCPATKQVQRSDADLAVFDVTYQGAHTCH 204
                       8***************************98889**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.8E-28132205IPR003657WRKY domain
PROSITE profilePS5081122.768138201IPR003657WRKY domain
SuperFamilySSF1182901.24E-24142205IPR003657WRKY domain
SMARTSM007747.1E-41143205IPR003657WRKY domain
PfamPF031068.8E-27144204IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MDGGDIHLLL SILADGEEQA RQLGEPAAAA DDEYHGGGRG EEYYRGVARQ LQGTLARAMG  60
IARAIEAAAF AGGGGGGGAS GSRGTTGDRS DSPRSADESS GRTARDAAVA QQERHHDTIK  120
RRKGLPRWTE KFRVPDASLE ATPDDGFSWR KYGQKDILGA KFPRGYYRCT YRNAQGCPAT  180
KQVQRSDADL AVFDVTYQGA HTCHQKQRRA AAAGDQPPPP PPQADPSVEL LVNFRHGLKV  240
ETNGLAPPPP PPPTTTTNFH DDQHFCFPSM PPFHAGVGPP PPPDDALGGG CNNFSSPPFV  300
SPAGSAAGES YFSMEHSYEP RGGGGHFVMS RGDSSELHEV VSAAASSSAV VDPAAAAGGF  360
DYPLYHGEVD PHLPFPPLFG HASMYGQYRD A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-121442011569WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.576960.0flower| seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1160112840.0
Expression AtlasQ5VMX9-
Function -- GeneRIF ? help Back to Top
  1. OsWRKY71 might function as a transcriptional regulator in rice defene signaling pathways.
    [PMID: 16919842]
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g06360.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g06360
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6769320.0AY676932.1 Oryza sativa (indica cultivar-group) transcription factor WRKY100 (WRKY100) mRNA, complete cds.
GenBankAK2879850.0AK287985.1 Oryza sativa Japonica Group cDNA, clone: J075093G10, full insert sequence.
GenBankAK2419190.0AK241919.1 Oryza sativa Japonica Group cDNA, clone: J075074E04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643057.10.0PREDICTED: probable WRKY transcription factor 30
TrEMBLQ6B6Q70.0Q6B6Q7_ORYSI; Transcription factor WRKY100
TrEMBLQ5VMX90.0Q5VMX9_ORYSJ; Os06g0158100 protein
STRINGBGIOSGA022355-PA0.0(Oryza sativa Indica Group)
STRINGLOC_Os06g06360.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
MonocotsOGMP133402730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.19e-38WRKY family protein
Publications ? help Back to Top
  1. Liu X,Bai X,Wang X,Chu C
    OsWRKY71, a rice transcription factor, is involved in rice defense response.
    J. Plant Physiol., 2007. 164(8): p. 969-79
    [PMID:16919842]