PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g05340.1
Common NameOSJNBa0007O20.28, P0036F10.11
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family AP2
Protein Properties Length: 400aa    MW: 43093 Da    PI: 7.2791
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g05340.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.21.2e-1480139155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s+++GV++++++gr++A+++d  ++n    k+ k+++lg +  ++ Aa+a++ a++k++g
  LOC_Os06g05340.1  80 SRFRGVSRHRWTGRFEAHLWDkGTWNPtqkKKgKQVYLGAYNEEDAAARAYDLAALKYWG 139
                       789******************888855566447**********99*************98 PP

2AP252.31.4e-16182233155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  LOC_Os06g05340.1 182 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 233
                       89****99**********99966...3.6*************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.24E-1580148IPR016177DNA-binding domain
PfamPF008471.3E-1180139IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-1481148IPR001471AP2/ERF domain
PROSITE profilePS5103219.17781147IPR001471AP2/ERF domain
SMARTSM003802.7E-2381153IPR001471AP2/ERF domain
PRINTSPR003672.9E-58293IPR001471AP2/ERF domain
CDDcd000182.13E-23182243No hitNo description
PfamPF008475.0E-12182233IPR001471AP2/ERF domain
SuperFamilySSF541716.41E-18182243IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.3E-18183242IPR001471AP2/ERF domain
SMARTSM003802.7E-26183247IPR001471AP2/ERF domain
PROSITE profilePS5103218.953183241IPR001471AP2/ERF domain
PRINTSPR003672.9E-5223243IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
METYGLVKDE LLHGIGGGQG RLYCEVKPTA APAVITAAGG GAKSVKRRKR EPSAAAMSAV  60
TVAGNGKEAG GSNAANKRSS RFRGVSRHRW TGRFEAHLWD KGTWNPTQKK KGKQVYLGAY  120
NEEDAAARAY DLAALKYWGP TTYTNFPVAD YEKELKLMQG VSKEEYLASI RRKSNGFSRG  180
VSKYRGVARH HHNGRWEARI GRVFGNKYLY LGTYSTQEEA ARAYDIAAIE YRGINAVTNF  240
DLSTYIRWLK PPSSSSAAGT PHHHGGGMVV GADRVLAPAQ SYPISAAADD DVAGCWRPLP  300
SPSSSTTTAL SLLLRSSMFQ ELVARQPVVE GDDGQLAVVS GDDADADADS DVKEPPPESE  360
YGEVFASDEA AAAAAYGCSM YELDDSFALI DDSVWNCLI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14248KSVKRRK
2105113PTQKKKGKQ
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ5VP53
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g05340.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g05340
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankAP0037670.0AP003767.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0036F10.
GenBankAP0034870.0AP003487.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0007O20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641668.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ6X5Y63e-92WRI1_ARATH; Ethylene-responsive transcription factor WRI1
TrEMBLQ5VP530.0Q5VP53_ORYSJ; AP2 DNA-binding domain protein-like
STRINGLOC_Os06g05340.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP11217209
MonocotsOGMP41623473
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.31e-84AP2 family protein