PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g04960.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB_related
Protein Properties Length: 342aa    MW: 36408.4 Da    PI: 8.0506
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g04960.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.73.5e-105491544
                      -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
   Myb_DNA-binding  5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44
                      T+eEd +++ a++ +G++  + Ia+ +  gRt++ +k+++
  LOC_Os06g04960.1 54 TEEEDRIIIAAHAIHGNK-RACIAKLLD-GRTDNAIKNHL 91
                      9*****************.*********.**********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.2915499IPR017930Myb domain
SuperFamilySSF466892.85E-75494IPR009057Homeodomain-like
PfamPF002492.4E-65491IPR001005SANT/Myb domain
CDDcd001673.50E-75490No hitNo description
Gene3DG3DSA:1.10.10.609.8E-115490IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MGEGDAGQES YHAMSKSRPP DQYWMDGQDL CRKPAWKSAT RAKSPPIDFE AHETEEEDRI  60
IIAAHAIHGN KRACIAKLLD GRTDNAIKNH LEFYSEASIL QRWSMQTWLL QGILNPGVQS  120
ASVPPEFKIF RIPLTRNGGG GGGDEAEGNG GGGGGWGAAA TAVGSSGCGL VRTPDGTTKL  180
LIWSTEMLYG TTTTTLLIVA FTSALRVKEE LAGDELHLSV VIVPAIPALG SGCARSSVIH  240
VISTDARERR RFGRMAISSA RLPVEWIPSS ERSPSLVSST ALSSSAFAFA AALHVLPPPL  300
RPSLAVIAIG RTTIYEDAGR RRTLHLHHAA APSPHLTPSL L*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.890870.0panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329924860.0
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g04960.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g04960
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankAP0003990.0AP000399.1 Oryza sativa Japonica Group genomic DNA, chromosome 6, clone:P0535G04.
GenBankAK1072770.0AK107277.1 Oryza sativa Japonica Group cDNA clone:002-126-A07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLOC_Os06g04960.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2012144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.13e-14myb domain protein 109