PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g02230.1
Common NameLOC4339899, Os06g0112300, OsJ_19871, P0029D06.25
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family B3
Protein Properties Length: 176aa    MW: 18876.7 Da    PI: 5.2481
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g02230.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.49.5e-1760152598
                       -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-..SS.SEE..EE CS
                B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld..gr.sefelvv 94 
                         +s+ + + ++++p +f   h + ++e +t  + ++ g+sW   +  +++ ++  l +GW+eF+ +n+L +gD +vF+l+  g   + e+ v
  LOC_Os06g02230.1  60 IAKSHLHPKFQMWIPPRFQ--HRLAEPEARTAAVLHSGGKSWATSY--CGHLKMKKLDAGWSEFAVDNRLLVGDACVFELVamGAaGGLEFQV 148
                       34566667799*******6..6666778889***************..*******************************76446667777777 PP

                       EEE- CS
                B3  95 kvfr 98 
                       +++r
  LOC_Os06g02230.1 149 QILR 152
                       7766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.6E-1951152IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-1852152IPR015300DNA-binding pseudobarrel domain
CDDcd100174.03E-1554152No hitNo description
PROSITE profilePS5086312.95756154IPR003340B3 DNA binding domain
SMARTSM010190.002256154IPR003340B3 DNA binding domain
PfamPF023628.9E-1559152IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009072anatomyplant ovary
PO:0007042developmental stagewhole plant fruit formation stage
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MELDTDPTKL KAKPIIKPKV EPCDDDDELP PPPPPASGSG EDWEATTPLA AGNPFFTALI  60
AKSHLHPKFQ MWIPPRFQHR LAEPEARTAA VLHSGGKSWA TSYCGHLKMK KLDAGWSEFA  120
VDNRLLVGDA CVFELVAMGA AGGLEFQVQI LRGGLPAEVV TSKGLTSDQP ILIVD*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.203090.0panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329921290.0
Expression AtlasQ9LHY9-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g02230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g02230
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1069200.0AK106920.1 Oryza sativa Japonica Group cDNA clone:002-119-B04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643738.11e-126PREDICTED: B3 domain-containing protein Os06g0112300
RefseqXP_015643739.11e-126PREDICTED: B3 domain-containing protein Os06g0112300
SwissprotQ9LHY91e-128Y6112_ORYSJ; B3 domain-containing protein Os06g0112300
TrEMBLA0A0E0PSL01e-125A0A0E0PSL0_ORYRU; Uncharacterized protein
STRINGLOC_Os06g02230.11e-126(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120461933
Representative plantOGRP7665916
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.12e-07B3 family protein