PlantTFDB - Plant Transcription Factor Databases @ CBI, PKU
PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information? help Back to Top
TF ID LOC_Os06g01230.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 393aa    MW: 43970.5 Da    PI: 7.5817
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g01230.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1553.4e-48181481128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                       lp+GfrF+Ptdeelv +yLk k++g++++    i++vd+ ++ePwdLp +  +k+++ ew+fF++rd+ky+ g+r+nr+t++gyWkatgkd+ 
  LOC_Os06g01230.1  18 LPVGFRFRPTDEELVRHYLKGKIAGRSHPDLLLIPDVDLSTCEPWDLPaMsVIKSDDPEWFFFAPRDRKYPGGHRSNRSTAAGYWKATGKDRL 110
                       79*************************999889***************5347777888*********************************** PP

               NAM  92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       + s+  g l+g+kktLvf++grap+g +t W+mheyr 
  LOC_Os06g01230.1 111 IRSRpAGPLIGIKKTLVFHRGRAPRGLRTAWIMHEYRT 148
                       ***988889***************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.63E-568169IPR003441NAC domain
PROSITE profilePS5100555.13818169IPR003441NAC domain
PfamPF023652.8E-2619147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MKQGKVEMTP AVAAAAVLPV GFRFRPTDEE LVRHYLKGKI AGRSHPDLLL IPDVDLSTCE  60
PWDLPAMSVI KSDDPEWFFF APRDRKYPGG HRSNRSTAAG YWKATGKDRL IRSRPAGPLI  120
GIKKTLVFHR GRAPRGLRTA WIMHEYRTTE PHFQSGKNGS FVLYRLFNKH EQDDTHTPAS  180
NLDQQLSTSS QGNPQNGTPA VQPALASIMK DHQTLPSSGF SQLTEIQDAS TSVHDKEQTV  240
AHDDAFLDVL SQLPDLEPEQ RYNGFPNITS PIRPYSDHPF VGNLGEQDLS AHFGSTLSEQ  300
DLQSLLFSPN YTKMDKHPTG NVESNPTASS NNPNNNTLLM DSWRKNDSYQ MLLIQTTQML  360
LAVLLQSMHH KQKQVMLILK QEPRVAAWST VE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-431817020169NAC domain-containing protein 19
3swm_B1e-431817020169NAC domain-containing protein 19
3swm_C1e-431817020169NAC domain-containing protein 19
3swm_D1e-431817020169NAC domain-containing protein 19
3swp_A1e-431817020169NAC domain-containing protein 19
3swp_B1e-431817020169NAC domain-containing protein 19
3swp_C1e-431817020169NAC domain-containing protein 19
3swp_D1e-431817020169NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.892490.0callus| flower| leaf| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329741960.0
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g01230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g01230
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0641780.0AK064178.1 Oryza sativa Japonica Group cDNA clone:002-104-B01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642953.10.0PREDICTED: NAC domain-containing protein 7
TrEMBLI1PYP30.0I1PYP3_ORYGL; Uncharacterized protein
STRINGLOC_Os06g01230.10.0(Oryza sativa Japonica Group)
STRINGORGLA06G0000500.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1274945
MonocotsOGMP134132529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.11e-67NAC transcription factor-like 9