PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g51820.1
Common NameLOC107275355, Os05g0597000, OSJNBb0086G17.12, OSNPB_050597000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 228aa    MW: 24518.1 Da    PI: 8.3678
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g51820.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.71.8e-12250455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                      +h ++Er+RR+++N+ +  Lr+l P     + k+ + a+i   A+++Ik+Lq
  LOC_Os05g51820.1  2 SHIAVERNRRRQMNDHLKVLRSLTPAF---YIKRGDQASIIGGAIDFIKELQ 50
                      89************************9...9********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.68E-12154No hitNo description
PROSITE profilePS5088814.958149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.89E-17175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-13267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-9250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-11455IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009913Biological Processepidermal cell differentiation
GO:0010374Biological Processstomatal complex development
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MSHIAVERNR RRQMNDHLKV LRSLTPAFYI KRGDQASIIG GAIDFIKELQ TLLQSLEAQK  60
KRRQQPQAHL ISPASISASG GGSPSPTPSP RSLITSCSPT AAAGSSAGSS SSISPKDENK  120
QQLQLVAELA ACCNSPMADV EARISGANVL LRTLSRRAPP VRIIALLESL HLEVLHLNIT  180
TMDDTVLYSF VLKIGLDCHL SVDDLAMEVH QSFMPPPAAH PDNHLHS*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ5KQG3
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g51820.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g51820
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1444550.0AC144455.5 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0086G17, complete sequence.
GenBankAC1370000.0AC137000.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0035I01, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638702.11e-165PREDICTED: transcription factor MUTE-like
SwissprotQ9M8K61e-70MUTE_ARATH; Transcription factor MUTE
TrEMBLA0A0E0PS981e-165A0A0E0PS98_ORYRU; Uncharacterized protein
TrEMBLQ5KQG31e-165Q5KQG3_ORYSJ; Os05g0597000 protein
STRINGLOC_Os05g51820.11e-165(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP25315131
MonocotsOGMP111443441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06120.12e-59bHLH family protein