PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g50700.1
Common NameLOC9267508, OSJNBb0035N21.5
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 330aa    MW: 35868.2 Da    PI: 6.6272
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g50700.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY83.71.8e-26174232259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        D ++WrKYGqK++kgs++pr+YY+C+s   C+++k vers e p v++itY  eH h 
  LOC_Os05g50700.1 174 TDLWAWRKYGQKPIKGSPYPRGYYKCSSLkACMARKMVERSPEKPGVLVITYIAEHCHA 232
                       699************************9989*************************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081128.369168234IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.8E-26169234IPR003657WRKY domain
SuperFamilySSF1182901.44E-23171234IPR003657WRKY domain
SMARTSM007742.4E-31173233IPR003657WRKY domain
PfamPF031061.3E-21175231IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MTITHASSLS RFHPLLKKLI MEYSNDWDLQ ALVRSCGTAV ADSEPEPPAA PSTTRRAEAE  60
TVFVGRAGGV PEFVGQPVRS SAASFYDLEY LDLYHERPRA PFLVTAPSTS RERGEGGEHE  120
VLISFPAIAS TSGQGRKQPG RKPGVRTARP KRSKKSQLKK VVCEVPVADG GVSTDLWAWR  180
KYGQKPIKGS PYPRGYYKCS SLKACMARKM VERSPEKPGV LVITYIAEHC HAVPTQLNSL  240
AGTTRNNKPA SPDQQQQQQP SPGGASTDEA AAAAAKTEDS ADTTCSMADD ENDLWAPVEM  300
DMNDFFGPFD DDLDHFLDDD AVLGRRLSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-141752341977Probable WRKY transcription factor 4
2lex_A4e-141752341977Probable WRKY transcription factor 4
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ75HY9
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g50700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g50700
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1349290.0AC134929.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0035N21, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638808.10.0PREDICTED: WRKY transcription factor 22
TrEMBLQ75HY90.0Q75HY9_ORYSJ; Putative uncharacterized protein
STRINGLOC_Os05g50700.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1140847
MonocotsOGMP42793070
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.13e-36WRKY DNA-binding protein 27