PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g49700.1
Common NameLOC4339670, OJ1735_C10.9, Os05g0572000, OSNPB_050572000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 274aa    MW: 29706.4 Da    PI: 10.119
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g49700.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2612.7e-1997147256
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                        y+GVr++  +g+WvAeIr p +   r r++lg+++++e Aa a+++a+ kl+ge
  LOC_Os05g49700.1  97 LYRGVRQRQ-WGKWVAEIRLPQN---RVRVWLGTYDSPETAAHAYDRAAFKLRGE 147
                       59****999.**********954...5**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.44E-2996154No hitNo description
PROSITE profilePS5103223.16997154IPR001471AP2/ERF domain
SMARTSM003802.1E-3397160IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-2297154IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.8E-3097154IPR001471AP2/ERF domain
PfamPF008471.8E-1398147IPR001471AP2/ERF domain
PRINTSPR003672.4E-1298109IPR001471AP2/ERF domain
PRINTSPR003672.4E-12136156IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MDASLRTLPP AIFPGEVRSA VSSLLLSPGG SALDTVFSHL PPPVTIPPLG SSVYYRQSEL  60
LRHFAASQAA QAQSATAAAS SSSAAAAGLD DGAPRKLYRG VRQRQWGKWV AEIRLPQNRV  120
RVWLGTYDSP ETAAHAYDRA AFKLRGEYAR LNFPGVMDGR DCPDNLRQLR DAVDAKIQAI  180
RVRMARKRAR ARRQREESKK SQRAEDAKAA TPSRPVASER AASETTTTTT TTSSSYGSPD  240
GVLSMSAASV DGDCPLERMP SFDPELIWEM LNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-1896154463ATERF1
3gcc_A1e-1896154463ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1184190ARKRARA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.613470.0flower| root
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ65XK9
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g49700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g49700
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8416870.0CT841687.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C102K07, full insert sequence.
GenBankAC1042840.0AC104284.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1735_C10, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638431.10.0PREDICTED: ethylene-responsive transcription factor ERF061
SwissprotQ9C7W21e-41ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLQ65XK90.0Q65XK9_ORYSJ; Os05g0572000 protein
STRINGLOC_Os05g49700.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
MonocotsOGMP88282842
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22190.11e-32ERF family protein