PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g49240.1
Common NameLOC107277348, Os05g0567600, OsJ_19579, OSNPB_050567600
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB_related
Protein Properties Length: 86aa    MW: 9778.77 Da    PI: 5.8869
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g49240.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.71.1e-071260146
                      TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                      +  W+  E + + +a + +G +   +W+++a+ mg  +++++++ ++ +
  LOC_Os05g49240.1 12 KSEWSRKENKMFEEALAYYGEDtpnRWDKVASAMGGIKSAEEIRCHYED 60
                      578********************************668******99976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.155762IPR017877Myb-like domain
SMARTSM007175.5E-51164IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-41162IPR009057Homeodomain-like
SuperFamilySSF466896.88E-121270IPR009057Homeodomain-like
PfamPF002491.8E-61261IPR001005SANT/Myb domain
CDDcd001671.43E-41458No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 86 aa     Download sequence    Send to blast
MSGSRSSSPN SKSEWSRKEN KMFEEALAYY GEDTPNRWDK VASAMGGIKS AEEIRCHYED  60
LTDDVKTIES GRVQFPKYKT QGYWT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-22682277RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.463231e-144callus| flower| leaf| panicle| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379907561e-144
Expression AtlasB9FI64-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g49240.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g49240
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1209861e-142AC120986.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1781_H11, complete sequence.
GenBankAP0149611e-142AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankAK1211331e-142AK121133.1 Oryza sativa Japonica Group cDNA clone:J023075P20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639473.11e-58PREDICTED: protein RADIALIS-like 3
SwissprotQ6NNN02e-24RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLA0A0D3GAY41e-58A0A0D3GAY4_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0A2X81e-58A0A0E0A2X8_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0DUQ91e-58A0A0E0DUQ9_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0L5V41e-58A0A0E0L5V4_ORYPU; Uncharacterized protein
TrEMBLA0A0E0PRD21e-58A0A0E0PRD2_ORYRU; Uncharacterized protein
TrEMBLA2Y7K31e-58A2Y7K3_ORYSI; Putative uncharacterized protein
TrEMBLB9FI641e-58B9FI64_ORYSJ; Os05g0567600 protein
TrEMBLI1PY121e-58I1PY12_ORYGL; Uncharacterized protein
STRINGLOC_Os05g49240.14e-58(Oryza sativa Japonica Group)
STRINGBGIOSGA020378-PA4e-58(Oryza sativa Indica Group)
STRINGORGLA05G0226000.14e-58(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3471298
MonocotsOGMP106733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.11e-22RAD-like 1