PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g48850.1
Common NameLOC4339612, Os05g0563000, OsJ_19547, OSJNBb0053D02.2, OSNPB_050563000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 315aa    MW: 34100.4 Da    PI: 9.4414
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g48850.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1064.7e-33652061128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk... 79 
                       lp+G++F+Ptd+el+ e+L+ k++ ++      +   +    +i+   +i++++P++Lp  v+++    +fF++ +k+y+tg+rk+r+++   
  LOC_Os05g48850.1  65 LPAGVKFDPTDQELL-EHLEGKARPDSrklhplV---DefipTIEGEnGICYTHPERLP-GVSKDGLVRHFFHRPSKAYTTGTRKRRKVHsde 152
                       799************.99****998885665442...133333665557**********.555666688******************844455 PP

               NAM  80 ....sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                           + +W++tgk+++v++ +g+  g kk+Lv+y   g+++k+ekt+Wvmh+y+l
  LOC_Os05g48850.1 153 vdggETRWHKTGKTRPVMA-NGRPRGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 206
                       5544778************.999***********6657999999*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-3856225IPR003441NAC domain
PROSITE profilePS5100533.06465225IPR003441NAC domain
PfamPF023658.2E-1566206IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009047anatomystem
PO:0007010developmental stagewhole plant fruit ripening stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MTWCNSFSDV RTAVDSSLSP AAAVAAAAGK KAAASLAVLV KMCPSCGHRA RYEQETTTIQ  60
DLPGLPAGVK FDPTDQELLE HLEGKARPDS RKLHPLVDEF IPTIEGENGI CYTHPERLPG  120
VSKDGLVRHF FHRPSKAYTT GTRKRRKVHS DEVDGGETRW HKTGKTRPVM ANGRPRGYKK  180
ILVLYTNYGK QRKPEKTNWV MHQYHLGSDE EERDGELVVS KVFFQTQPRQ CGSTAAAAAA  240
KEASAAVAAA VVNSNYSIVH GHQGGGGGSF LKEANVVHEF YDPAATMGYR PPAPAAHFAP  300
NFAVHAARNS FGGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-116520615140Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.539500.0flower| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329861920.0
Expression AtlasQ6AUG9-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g48850.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g48850
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1009830.0AK100983.1 Oryza sativa Japonica Group cDNA clone:J023145A15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639992.10.0PREDICTED: NAC domain-containing protein 73
SwissprotO494591e-127NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A0D3GAT20.0A0A0D3GAT2_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0PR830.0A0A0E0PR83_ORYRU; Uncharacterized protein
TrEMBLI1PXX70.0I1PXX7_ORYGL; Uncharacterized protein
TrEMBLQ6AUG90.0Q6AUG9_ORYSJ; Os05g0563000 protein
STRINGLOC_Os05g48850.10.0(Oryza sativa Japonica Group)
STRINGORGLA05G0222500.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5251585
MonocotsOGMP30753786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-118NAC domain containing protein 73