PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g45410.1
Common NameHSF10, HSF15, HSFA4D, LOC4339409, OJ1131_E09.10, Os05g0530400, OsJ_018517, OsJ_19305, SP17, SPL7
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family HSF
Protein Properties Length: 460aa    MW: 51163.9 Da    PI: 4.9482
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g45410.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1093.5e-34211122102
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl k+ye++ed+++++++sw   g sfvv+++ +f++++LpkyFkh+nf+SF+RQLn+YgF+k++ e+         weF+++ F +g+++ll
  LOC_Os05g45410.1  21 FLIKTYEMVEDAATNHVVSWGPGGASFVVWNPLDFSRDLLPKYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANEDFIRGHTHLL 104
                       9****************************************************************999.........**************** PP

                       XXXXXXXX CS
      HSF_DNA-bind  95 ekikrkks 102
                       ++i+r+k 
  LOC_Os05g45410.1 105 KNIHRRKP 112
                       *****985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004154.5E-6117110IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.0E-3717110IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.03E-3517110IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.6E-192144IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.4E-3021110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-195971IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406084IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-197284IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MESSNLGGGG GGGGGGGPPP FLIKTYEMVE DAATNHVVSW GPGGASFVVW NPLDFSRDLL  60
PKYFKHNNFS SFIRQLNTYG FRKIDPERWE FANEDFIRGH THLLKNIHRR KPVHSHSLQN  120
QINGPLAESE RRELEEEINR LKYEKSILVA DLQRQNQQQY VINWQMQAME GRLVAMEQRQ  180
KNIVASLCEM LQRRGGAVSS SLLESDHFSK KRRVPKMDLF VDDCAAGEEQ KVFQFQGIGT  240
DAPAMPPVLP VTNGEAFDRV ELSLVSLEKL FQRANDACTA AEEMYSHGHG GTEPSTAICP  300
EEMNTAPMET GIDLQLPASL HPSSPNTGNA HLHLSTELTE SPGFVQSPEL PMAEIREDIH  360
VTRYPTQADV NSEIASSTDT SQDGTSETEA SHGPTNDVFW ERFLTETPRS CLDESERQES  420
PKDDVKAELG CNGFHHREKV DQITEQMGHL ASAEQTLHT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-231211017129Heat shock factor protein 1
5d5v_B3e-231211017129Heat shock factor protein 1
5d5v_D3e-231211017129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.400180.0callus| flower| leaf| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO165807440.0
Expression AtlasQ93VB5-
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Hardly expressed in young leaves at 14 days after sowing (DAS). Expression detected in adult leaves at 28 DAS and increases with growing stage. {ECO:0000269|PubMed:12032317}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g45410.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:12032317}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g45410
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3444920.0AY344492.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF10 mRNA, complete cds.
GenBankAB0500960.0AB050096.1 Oryza sativa Japonica Group Spl7 mRNA for heat stress transcription factor Spl7, complete cds.
GenBankAK1004120.0AK100412.1 Oryza sativa Japonica Group cDNA clone:J023087K12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639851.10.0PREDICTED: heat stress transcription factor A-4d
SwissprotQ93VB50.0HFA4D_ORYSJ; Heat stress transcription factor A-4d
TrEMBLA0A0E0HH410.0A0A0E0HH41_ORYNI; Uncharacterized protein
TrEMBLA0A0E0PQA90.0A0A0E0PQA9_ORYRU; Uncharacterized protein
STRINGLOC_Os05g45410.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1286345
MonocotsOGMP32963778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.12e-66heat shock transcription factor A4A
Publications ? help Back to Top
  1. Yamanouchi U,Yano M,Lin H,Ashikari M,Yamada K
    A rice spotted leaf gene, Spl7, encodes a heat stress transcription factor protein.
    Proc. Natl. Acad. Sci. U.S.A., 2002. 99(11): p. 7530-5
    [PMID:12032317]
  2. Baniwal SK, et al.
    Heat stress response in plants: a complex game with chaperones and more than twenty heat stress transcription factors.
    J. Biosci., 2004. 29(4): p. 471-87
    [PMID:15625403]
  3. Tang T, et al.
    Genomic variation in rice: genesis of highly polymorphic linkage blocks during domestication.
    PLoS Genet., 2006. 2(11): p. e199
    [PMID:17112320]
  4. Guo J, et al.
    Genome-wide analysis of heat shock transcription factor families in rice and Arabidopsis.
    J Genet Genomics, 2008. 35(2): p. 105-18
    [PMID:18407058]