PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g43760.1
Common NameB1155G07.11, LOC4339298, Os05g0513100, OSNPB_050513100, TCP11
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family TCP
Protein Properties Length: 295aa    MW: 30475.6 Da    PI: 7.7587
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g43760.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP97.52.4e-3054158389
               TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg....... 88 
                       g+kdrhsk+ T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WL+++a+++i++l+ ++++++    +++ + +a++s ++       
  LOC_Os05g43760.1  54 GGKDRHSKVRTVKGLRDRRVRLSVPTAIQLYDLQDRLGLSQPSKVVDWLINAAQAEIDKLPPLQFPPH----DHDLVAAAASSMAPppfangg 142
                       78*************************************************************99999....222222222111112222333 PP

               TCP  89 ...............k 89 
                                      +
  LOC_Os05g43760.1 143 dghhgasassmledgD 158
                       4444333333333330 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136929.95955113IPR017887Transcription factor TCP subgroup
PfamPF036341.3E-2655117IPR005333Transcription factor, TCP
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020104anatomyleaf sheath
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MTSNNSTNEE LGGGGRKAAD KPSGGGGAAA AVASSRHWSA STESRIVRVS RVFGGKDRHS  60
KVRTVKGLRD RRVRLSVPTA IQLYDLQDRL GLSQPSKVVD WLINAAQAEI DKLPPLQFPP  120
HDHDLVAAAA SSMAPPPFAN GGDGHHGASA SSMLEDGDKA AGGGGMKAFM SLSNSLGLLN  180
AATMPATLAA HHHHHHHAAA YYAAAESWGN GGNGGHHHDV SHGVSPSAHN SPFPSLLSLA  240
PGSHHQFVFY SPEGGGFAVK EAAAEQFPVD SLDHSQGQLT LSSARSFLHS GSQG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.52860.0flower| leaf| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329799620.0
Expression AtlasQ5TKH1-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g43760.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g43760
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ2294840.0GQ229484.1 Oryza sativa Japonica Group TCP transcription factor (TCP11) mRNA, complete cds.
GenBankAC1306040.0AC130604.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone B1155G07, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankAK0699380.0AK069938.1 Oryza sativa Japonica Group cDNA clone:J023038I07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637968.10.0PREDICTED: transcription factor TCP13
TrEMBLQ5TKH10.0Q5TKH1_ORYSJ; Os05g0513100 protein
TrEMBLA0A0E0PPW10.0A0A0E0PPW1_ORYRU; Uncharacterized protein
STRINGLOC_Os05g43760.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP18015163
MonocotsOGMP24903584
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.19e-41TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5