PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g42180.1
Common NameOs05g0501200, OsJ_19096, OSJNBa0017K09.4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 324aa    MW: 34089.6 Da    PI: 6.4491
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g42180.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.47.9e-062122491254
                       HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  LOC_Os05g42180.1 212 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 249
                       677888999*******998.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.744200249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.64E-12210267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.86E-6210254No hitNo description
SMARTSM003530.0061211255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-9214257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042631Biological Processcellular response to water deprivation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071472Biological Processcellular response to salt stress
GO:2000214Biological Processregulation of proline metabolic process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MADEHEWWNS PCSARTGDDE AACSTADADE SAVGSTPMSF GHGGQPASLS DAAASSSSSS  60
FLLAGQHMDY WTQDFMGGRA AAAATASFDT LLQLQLQGGD AASRRLLLGD HAAAPPRHLV  120
VPGAPYGGGG GDDTAAPPRG LSPTPYEAAD NLQQQQSFPG GHHVVSNTDR LHDHHQDAGS  180
PSPATRSSPG SPAAAKKPRI EAPSPMPTFK VRKEKLGDRI TALQQLVSPF GKTDTASVLH  240
EAIEYIKFLH DQVASLSSPY LRCGRPVQLQ HQQGSHKVNG NCEGKQLDLR SRGLCLVPVA  300
STYTVASETA TEFWHPTFGG TFR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.802830.0leaf
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1166316770.0
Expression AtlasQ60EJ4-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g42180.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g42180
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8378340.0CT837834.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA129D11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638165.10.0PREDICTED: transcription factor bHLH68 isoform X3
TrEMBLA0A0E0PPL00.0A0A0E0PPL0_ORYRU; Uncharacterized protein
TrEMBLQ60EJ40.0Q60EJ4_ORYSJ; Os05g0501200 protein
STRINGLOC_Os05g42180.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP31351129
MonocotsOGMP29703464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.15e-49bHLH family protein