PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g41540.1
Common NameLOC4339196, OJ1579_G03.9, Os05g0495200, OsJ_17245, OSNPB_050495200
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bZIP
Protein Properties Length: 225aa    MW: 24584.8 Da    PI: 5.9801
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g41540.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.42.4e-1168117251
                       XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 
                       ++l ++rr   NReA r++R++Kka  + Lee+vk+L a N++L k+l+ 
  LOC_Os05g41540.1  68 EDLTKTRRPLGNREAVRKYREKKKAHAAFLEEEVKKLRAANQQLLKRLQG 117
                       67899****************************************99975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.4E-1567135No hitNo description
SMARTSM003388.9E-1267134IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.00269116IPR004827Basic-leucine zipper domain
PfamPF077161.3E-1369124IPR004827Basic-leucine zipper domain
CDDcd146865.10E-1372125No hitNo description
SuperFamilySSF579594.25E-872117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MDDVPSQLLF SHPEVPDSFD DFLNNITTCT HTHTCNPPGP SATMHTHTCL HTHTQVFASG  60
SGEDDIKEDL TKTRRPLGNR EAVRKYREKK KAHAAFLEEE VKKLRAANQQ LLKRLQGHAA  120
LEAEVIRLRS ILLDVRGKID MEIGTFPYQK PCSVGSVACT DPGMCFNGNS EIGGVWEECS  180
RPVGADRMID KDGSMSQEID IPGPVHSISM DVVGSLVTSA SLSE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.268210.0callus| flower| leaf| panicle| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329823040.0
Expression AtlasQ65X73-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g41540.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g41540
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1121600.0AC112160.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1579_G03, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankAK1049860.0AK104986.1 Oryza sativa Japonica Group cDNA clone:002-110-E11, full insert sequence.
GenBankAK0722810.0AK072281.1 Oryza sativa Japonica Group cDNA clone:J023018E07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638714.11e-168PREDICTED: uncharacterized protein LOC4339196
SwissprotQ8GTS23e-57BZP23_ARATH; Basic leucine zipper 23
TrEMBLA0A0D3G9C51e-168A0A0D3G9C5_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0PPE31e-168A0A0E0PPE3_ORYRU; Uncharacterized protein
TrEMBLI1PWW41e-168I1PWW4_ORYGL; Uncharacterized protein
TrEMBLQ65X731e-168Q65X73_ORYSJ; Os05g0495200 protein
STRINGLOC_Os05g41540.11e-168(Oryza sativa Japonica Group)
STRINGORGLA05G0186200.11e-168(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP19701536
MonocotsOGMP38313675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16770.15e-40bZIP family protein