PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g40680.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 455aa    MW: 50952 Da    PI: 4.8547
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g40680.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR141.83.6e-13393442147
              FAR1   1 kfYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkk 47 
                       +f+n+YA  +GFs+++++++++   krnge+t+ tf+C+++gk+++++k+
  LOC_Os05g40680.1 393 EFFNFYALLAGFSIVRAHNYHTtskKRNGEVTRVTFRCNRQGKPTSQSKS 442
                       6*******************998999*******************99887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.1E-11393442IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MELGEEKEER KRGSKSQMEG ESTMSESKSS SRGKKKSKTT SEQKVEIHTK ETQNLANTKK  60
KQEEGKIKRN KKAPVQGVIQ KDKECKSSKE IEGKNIGGIQ KEKQSKSSME IEEKESDIKK  120
HFKALTEMDT EIISQSNLTE INTAMLSSGI TIELSEGERS IQSKQIQNMK QSILTEYETT  180
FVNSGITGNE VGISNALDEP NTDHIGLGAE DATVEKQSMD NSASVTEAFV DYSNKYSYDE  240
LSLFGSMNSV ANMSYTSLME QIISSQPTIS DMQEQNSAHS TFVASPSAFQ EDESNEEDAM  300
DNWNLDIFNL LDGEKEPSSM DNHRCTSVQG TRDDDNNPND NSETNQQELT EEDINIFVEN  360
EQEEATKGNN AAIDSRYIPR VGTQFKTITK AHEFFNFYAL LAGFSIVRAH NYHTTSKKRN  420
GEVTRVTFRC NRQGKPTSQS KSRGMRFGIF QGYN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g40680.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g40680
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1182890.0AC118289.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0099O15, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLQ8H3L30.0Q8H3L3_ORYSJ; Putative far-red impaired response protein
STRINGLOC_Os05g40680.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3012351