PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g39480.1
Common NameOSJNBa0052E20.13, P0015C02.8
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 910aa    MW: 103784 Da    PI: 8.3443
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g39480.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR152.31.9e-16151230290
              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                       fYn YA+ +GF +r+sk++++ + g   +++f+C +eg++++ +          + tr+g ka++++++++ ++kw+v+ +++eHnHe+ 
  LOC_Os05g39480.1 151 FYNLYARFTGFGIRRSKNRYK-DGGVKSMQEFCCIREGRDNSVT---------GPPTRIGYKAMVRLNRSSeSQKWRVSAFVSEHNHEMK 230
                       9***************99987.889999**********988754.........569**************99***************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.3E-11151229IPR004330FAR1 DNA binding domain
PfamPF105511.5E-30353446IPR018289MULE transposase domain
PROSITE profilePS5096610.237636672IPR007527Zinc finger, SWIM-type
PfamPF044342.8E-5637668IPR007527Zinc finger, SWIM-type
SMARTSM005755.4E-5647674IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 910 aa     Download sequence    Send to blast
MSSARSVASP SAVRVGGVSS APDVEQQKSV AAVGASSPVS SSKHHHMAKA EDGTITVNGD  60
KQHNPAADRG SYQNPCWTET IFAKIAMEEE GWPEKGGEDH SGQPMDVVPL ERIVVEGEED  120
SDLLPISLFD PAILLPKIGQ TFNEDSHGYA FYNLYARFTG FGIRRSKNRY KDGGVKSMQE  180
FCCIREGRDN SVTGPPTRIG YKAMVRLNRS SESQKWRVSA FVSEHNHEMK RDLQHTKHFR  240
SHNFIDEGTK RNIKEMVDNG MTPTTMYGLL SGMHGGPSLT PFTRRAVTRM AYAIRRDECS  300
NDVQKTLNFF REMQCRSKNF FYTIQIDGAS RIKNIFWCHS LSRLSFDHFG DAITFDTTYQ  360
TNRYNMPFGI FVGVNNHFQT AIFGCALLRE ETIEAFKWLF QTFTDAMHGK RPAAILTDNC  420
HQMEVAIKAV WPETIHRVCK WHVLKNAKEN LGNIYSKRSS FKQEFHRVLN EPQTEAEFEK  480
AWSDLMEQYN LESSVYLRRM WDMKKKWAPA YFREFFFARM STTQRSESMN HVLKKYVKPS  540
SSLHGFAKRY ENFYNDRIEA EDAEEHDTYN EKVSTLTSSP IEKHASRVYT RGEFSRFKEQ  600
FKLSFSFMVY HTSDQHVLQL VHIGDDTLQS WGSKEFKVQV DLTEQDLSCG CKLFEHLGII  660
CSHIIRVMVQ YGFTEIPKKY ILKRWTKDAR DSIPKHLEES YLKDKEAASS RTYRNTLLHK  720
SALDMVRLGG TSSETYEKTV EVLTKLIGEL QVMCTSQVVN NKEIHCGDRT IGKKPTGVQL  780
DDSVDSSDSE HGMSDEFCVA DEDGIGQDVS AGEDSVDVDM TDVNEEDILP PEVRRSRGRP  840
RSTRLMSKGE TSSKAKKKKA SESTSKDESK NHAKGKKEST KQIRYCKQCG GHGHYKSTCG  900
RKSSYERRK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.123040.0panicle
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ6ATW8
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g39480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g39480
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1354230.0AC135423.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0015C02, complete sequence.
GenBankAC1213640.0AC121364.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0052E20, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLQ6ATW80.0Q6ATW8_ORYSJ; Uncharacterized protein
STRINGLOC_Os05g39480.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3012351
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-115FAR1-related sequence 5