PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g38140.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 244aa    MW: 26197.6 Da    PI: 8.1949
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g38140.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH331.1e-1075122454
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       ++  rE+ RRdr+N++f+eL  +l +    + ++ +K++iL  A + +++L
  LOC_Os05g38140.1  75 TKACREKLRRDRLNERFNELSAILEPG---KPPRADKVSILSDAARLLSQL 122
                       5678**********************9...89***************9999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.84E-1263137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.28471122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-875122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.16E-875127No hitNo description
SMARTSM003534.2E-877128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-1178144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MSCGGAGQSG WLLEYGLVEE EIQGSDFIYM VDDPAAVSSV LLGFDVPRKE DGSGGQDNSA  60
SKKRSRPESS APPGTKACRE KLRRDRLNER FNELSAILEP GKPPRADKVS ILSDAARLLS  120
QLRAEAQKLK SSNESLQDSI KSLKAEKSEL RDEKTRLKAE RERLEQMLKG VGAATPAAPA  180
PFVPHHAAAV AAAPAYHPAA FAQAGGKYVP YATSYAPPAA FWQWIPPTSL DTSKDPVMWP  240
PVA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.496280.0callus| leaf| panicle| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g38140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g38140
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0634980.0AK063498.1 Oryza sativa Japonica Group cDNA clone:001-116-D07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637537.11e-177PREDICTED: transcription factor ILR3
SwissprotQ9FH371e-63ILR3_ARATH; Transcription factor ILR3
TrEMBLI1PW901e-177I1PW90_ORYGL; Uncharacterized protein
STRINGLOC_Os05g38140.11e-176(Oryza sativa Japonica Group)
STRINGORGLA05G0163800.11e-176(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7551766
MonocotsOGMP93863136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.16e-57bHLH family protein