PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g37190.1
Common NameLOC4338934, Os05g0444200, OsJ_18716, OSJNBa0020H14.18, OSNPB_050444200
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 390aa    MW: 42053.9 Da    PI: 6.5621
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g37190.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2187.9e-06211230120
                       EEETTTTEEESSHHHHHHHH CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                       ++C+ C+k F+r  n++ H+
  LOC_Os05g37190.1 211 FVCHVCNKAFNRYNNMQMHM 230
                       89*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.35E-5207234No hitNo description
PROSITE profilePS5015710.388211238IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.1E-5211230IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280213233IPR007087Zinc finger, C2H2
PROSITE profilePS508688.135256272IPR003616Post-SET domain
SuperFamilySSF576676.88E-5282318No hitNo description
Gene3DG3DSA:3.30.160.607.1E-4285318IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MVLRACTMVE GSSFVVGGGG GVPFFEWLKP RSSPPPSPSS SSTTTTSSSL TAQRQPRGAG  60
TMLCLPLLGR LGEEPVDADD GGAMNNPPVK EEVSNTTDDY AGVDLNIGLP ATTGGGSSED  120
APMDEDEEDD DDDEEEETED DEEKAAGLEG CKVEEKEREQ VHSEGSKYYV SVGGGEDQSS  180
NAGDVDAGAA CRGRRYWIPT PAQILIGPVQ FVCHVCNKAF NRYNNMQMHM WGHGREYRKG  240
PESLKGTQAT ATLAMLKLPC YCCAAGCRNN VGHPRARPLK DFRTLQTHYK RKHGAKPFAC  300
RRCAKPFAVK GDWRTHEKNC GKRWFCACGS DFKHKRSLND HVRSFGGGHF PVAAAAAAAH  360
AAAAPPKQQQ RIIRFDDAMA QMHGGGLMN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.542320.0callus| leaf
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329878670.0
Expression AtlasQ6F2N5-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g37190.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g37190
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1026580.0AK102658.1 Oryza sativa Japonica Group cDNA clone:J033101H19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640742.10.0PREDICTED: protein TRANSPARENT TESTA 1 isoform X1
TrEMBLQ6F2N50.0Q6F2N5_ORYSJ; Os05g0444200 protein
STRINGLOC_Os05g37190.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4101597
MonocotsOGMP44723667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51220.13e-95WIP domain protein 5