PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g37170.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bZIP
Protein Properties Length: 541aa    MW: 59424 Da    PI: 6.0877
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g37170.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.77.8e-11230259433
                       XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLee 33 
                        k err+++NReAAr+sR+RKka++++Le+
  LOC_Os05g37170.1 230 AKTERRLAQNREAARKSRLRKKAYVQQLET 259
                       699*************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.9E-6227303IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.381229273IPR004827Basic-leucine zipper domain
PfamPF001701.2E-7230260IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.53E-6231274No hitNo description
Gene3DG3DSA:1.20.5.1705.6E-7231260No hitNo description
CDDcd147085.18E-21231283No hitNo description
PROSITE patternPS000360234249IPR004827Basic-leucine zipper domain
PfamPF141445.3E-29312386IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MHGACMCEPS SLVSTAATSL FFVKLRVVLI GMVQGEGSSW RMANDHDRAV PHSQAVAYGI  60
QGHAVLAAPP ANFLELQPAA AAYFGELEKA LIHGTSAGAG VDHGMIQSDA YTESGYLAAR  120
PPTLEIFPSW PMSHLQEPYS NSQSVGSTTD SSSAQNTMSQ AELVSPASMR SDSGQEQQQQ  180
EVLMVTIDDY NYKQGLGAAI ATAPSFQQHA GGLDMRKHGS TRKDGKLLDA KTERRLAQNR  240
EAARKSRLRK KAYVQQLETS RIRLQQIEQE LQRARSQGLF PGGCSAPGDM SSGAVMFDMD  300
YTRWIDDDSK CMAELQGALQ AQLPDGNLGA IVEECMRHYD ELFHLRAVLA SSDVFHLMTG  360
MWAAPAERCF LWMAGFRPSE ILKMLIPQLD PLTEQQLMGM CSLQQSSEQT EEALAQGLHQ  420
LHQSLADAVG GGPLNDGADV ANYTGLMALA LGRLENLESF YRQADNLRQE TLHHMRRILT  480
TRQTARCFLS IGEYNRRLRA LSSLWASRPR ENFIATENVS PTGTEFQVIQ QSQQNQFSGF  540
*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.234690.0callus| leaf| panicle| seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329947290.0
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g37170.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g37170
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1095200.0AK109520.1 Oryza sativa Japonica Group cDNA clone:002-113-G01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639065.10.0PREDICTED: transcription factor HBP-1b(c38) isoform X8
SwissprotO241601e-113TGA21_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-2.1
TrEMBLI1PW370.0I1PW37_ORYGL; Uncharacterized protein
STRINGLOC_Os05g37170.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1069649
MonocotsOGMP38093166
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.31e-138bZIP family protein