PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g37050.1
Common NameOsJ_18705
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB_related
Protein Properties Length: 134aa    MW: 14780.4 Da    PI: 6.0081
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g37050.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.56.3e-082571347
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                      +W++ Ed+ +  a   ++ +   +W+ +a++++ gR++ ++ ++++ +
  LOC_Os05g37050.1 25 PWSKAEDKVFESALVAFPEHthnRWAIVASRLP-GRSAHEVWEHYRVL 71
                      8***************9999999**********.***********976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007174.5E-72274IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.7E-72471IPR009057Homeodomain-like
SuperFamilySSF466893.44E-122479IPR009057Homeodomain-like
PfamPF002491.0E-62571IPR001005SANT/Myb domain
CDDcd001674.01E-62572No hitNo description
PROSITE profilePS500906.8992572IPR017877Myb-like domain
PROSITE profilePS5129410.674106133IPR017930Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MAFYGGEMGG SSSSWVAPLV PSSRPWSKAE DKVFESALVA FPEHTHNRWA IVASRLPGRS  60
AHEVWEHYRV LVDDVDLIER GMVASPGCWD DGAGRGGAQG ASRGGDERRR GVPWTEEEHR  120
LFLEGLEKYR RGD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-142292777RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.549345e-77leaf| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329923435e-77
Expression AtlasB9FJ81-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g37050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g37050
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1474620.0AC147462.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone B1110B01, complete sequence.
GenBankAC1376110.0AC137611.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0020H14, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638220.15e-73PREDICTED: transcription factor DIVARICATA
SwissprotQ8S9H75e-27DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A0E0PN449e-92A0A0E0PN44_ORYRU; Uncharacterized protein
TrEMBLA2Y5549e-92A2Y554_ORYSI; Putative uncharacterized protein
TrEMBLB9FJ818e-92B9FJ81_ORYSJ; Uncharacterized protein
STRINGLOC_Os05g37050.14e-92(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP27517122
MonocotsOGMP28953687
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.19e-24MYB family protein