PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g32070.1
Common NameOJ1286_E05.15, OSJNBa0073E05.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family SRS
Protein Properties Length: 331aa    MW: 33183.7 Da    PI: 8.5011
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g32070.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702224.61.9e-691042693154
            DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa....aeaaskrkrelkskkqsalsstkl 91 
                       sg+a+C+dCGnqakkdC+h+RCRtCCksrgfdC thv+stWvpaa+rrerqq + aass  ++sa    ++a++k++r l s++++++s+t++
  LOC_Os05g32070.1 104 SGAATCHDCGNQAKKDCVHHRCRTCCKSRGFDCPTHVRSTWVPAARRRERQQLAGAASSPPTSSAfpaaTTASAKKPRLLGSQTTTTTSRTST 196
                       7889*************************************************9999999999889988899999****99************ PP

            DUF702  92 ssaeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                       s+a+++++++tss          lP++v+++avfrcvrv+svddg++e+aYq+av+i+Gh+f+G+LydqG+++
  LOC_Os05g32070.1 197 SNATTPRSFDTSSshqvasfrdaLPRHVRAPAVFRCVRVTSVDDGDDEFAYQAAVTINGHMFRGFLYDQGADD 269
                       ***********999********************************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.4E-61106268IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016239.1E-27108150IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.3E-25220266IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MVLVAPAASY HHHRAAAAAA AAAAAAAAAE PVFPLLGTGQ CALDADTAKS SGAAAAAGVP  60
PGSASAIHFW QSQPTTAAGA GGGSADKKPL PMLDYGGIGG PGGSGAATCH DCGNQAKKDC  120
VHHRCRTCCK SRGFDCPTHV RSTWVPAARR RERQQLAGAA SSPPTSSAFP AATTASAKKP  180
RLLGSQTTTT TSRTSTSNAT TPRSFDTSSS HQVASFRDAL PRHVRAPAVF RCVRVTSVDD  240
GDDEFAYQAA VTINGHMFRG FLYDQGADDG RGGMASTSND ESSHGAGAAV PSISDLHLGS  300
ASAAVPPHLY SGGSGGPLIL GGLGYGNTMN *
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ6AV91
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g32070.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g32070
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1362190.0AC136219.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0073E05, complete sequence.
GenBankAC1047100.0AC104710.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1286_E05, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638614.10.0PREDICTED: protein LATERAL ROOT PRIMORDIUM 1
SwissprotQ94CK97e-61LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBLA0A0E0PLV60.0A0A0E0PLV6_ORYRU; Uncharacterized protein
TrEMBLB8AXT90.0B8AXT9_ORYSI; Putative uncharacterized protein
TrEMBLC7J3190.0C7J319_ORYSJ; Os05g0386201 protein
TrEMBLI1PV750.0I1PV75_ORYGL; Uncharacterized protein
TrEMBLQ6AV910.0Q6AV91_ORYSJ; Uncharacterized protein
STRINGBGIOSGA018131-PA0.0(Oryza sativa Indica Group)
STRINGLOC_Os05g32070.10.0(Oryza sativa Japonica Group)
STRINGORGLA05G0127300.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP13131549
MonocotsOGMP35793679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.24e-54Lateral root primordium (LRP) protein-related