PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g31420.1
Common NameOJ1126_B11.2, Os05g0378500, OSJNBa0039A21.10, OSNPB_050378500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GRAS
Protein Properties Length: 561aa    MW: 58183.6 Da    PI: 8.0504
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g31420.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS231.53.9e-711575584374
              GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn....sseelaalklfsevsPilk 92 
                        L +cAea++++  + a+a La +  +as+dgd++qR+aa f+eA+a+ + r + ++++al ps++          e+ +a++ f +++P+l 
  LOC_Os05g31420.1 157 HLRRCAEALAASRPADADAELASIARMASSDGDAVQRVAAAFAEAMARVVIRPWRGVSAALFPSDAGAAGdaltAWEAEFARQSFLNLCPLLH 249
                       6889*********************************************************66666544346767778888999********* PP

              GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                       ++ ++ N+ Ile + +++ +Hi+D++  + ++W+ Llq La+R+ +  p lR+T v++    +k+ l + ++ La   ++ gvp++ ++ v++
  LOC_Os05g31420.1 250 LAAVAVNEIILETTRNDKFIHIVDLGGIHHAHWVELLQGLATRRaAVRPCLRLTIVHE----HKHFLGQAAQVLAAESDRHGVPLDLHI-VES 337
                       *****************************************98867799*********....99************************9.799 PP

              GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrll.........................desvsleserdevLklvkslsPkvvvvveqeadhnses 252
                       ++e+l+l++L v+++ a+++ + lqlhrl+                           +++++s+ d++L+ +  lsP+ ++++e+ea+h  +s
  LOC_Os05g31420.1 338 SVEALKLDALGVRSDHAVVIVSTLQLHRLVgagilsttappspaaaaaasmitspLPPANMSSKVDRLLRGFHLLSPRAIILTENEANHFVPS 430
                       ****************************************************9987788888899**************************** PP

              GRAS 253 FlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplse..kaakqaklllr 342
                       F +rf++al yy  lf ++e+  ++++ er+  Er ll++ei++v+ac ++  r +rhetl++W  r+++aGF  +p  +  +aa  ++++ +
  LOC_Os05g31420.1 431 FTDRFASALPYYEQLFAAMEEA-GAATVERKAAERYLLREEIKDVIACDHDGpRWARHETLGRWVVRMGAAGFALAPAITvvTAAGRVRAVAA 522
                       *******************887.78999*********************9988********************98876551144555566666 PP

              GRAS 343 kvksdg....yrveeesgslvlgWkdrpLvsvSaWr 374
                       + ++ g    y v e  g+l+l  +++p++ vSaWr
  LOC_Os05g31420.1 523 RLPGGGderrYGVTEGGGWLILNREEKPMFCVSAWR 558
                       6654334566*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098536.973128532IPR005202Transcription factor GRAS
PfamPF035141.3E-68157558IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 561 aa     Download sequence    Send to blast
MVAQAATAAA TTTAAATTAA VPMTNFQLFG SMVPVPVASM ATATAPAAVA AADNGGHGSS  60
SASQNASGSG EGQGGSMSLS LQLRPLGSTP TAAVAVSVPP MAAAPMMAGP AAAAPAPAPP  120
LATMAVAQNA SLAAVASALA AHRRNQATHR SAALHGHLRR CAEALAASRP ADADAELASI  180
ARMASSDGDA VQRVAAAFAE AMARVVIRPW RGVSAALFPS DAGAAGDALT AWEAEFARQS  240
FLNLCPLLHL AAVAVNEIIL ETTRNDKFIH IVDLGGIHHA HWVELLQGLA TRRAAVRPCL  300
RLTIVHEHKH FLGQAAQVLA AESDRHGVPL DLHIVESSVE ALKLDALGVR SDHAVVIVST  360
LQLHRLVGAG ILSTTAPPSP AAAAAASMIT SPLPPANMSS KVDRLLRGFH LLSPRAIILT  420
ENEANHFVPS FTDRFASALP YYEQLFAAME EAGAATVERK AAERYLLREE IKDVIACDHD  480
GPRWARHETL GRWVVRMGAA GFALAPAITV VTAAGRVRAV AARLPGGGDE RRYGVTEGGG  540
WLILNREEKP MFCVSAWRRQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-271515581375GRAS family transcription factor containing p
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ688G4
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g31420.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g31420
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1362180.0AC136218.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0039A21, complete sequence.
GenBankAC1057670.0AC105767.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1126_B11, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638611.10.0PREDICTED: scarecrow-like protein 3
TrEMBLB8AXQ70.0B8AXQ7_ORYSI; Putative uncharacterized protein
TrEMBLQ688G40.0Q688G4_ORYSJ; Os05g0378500 protein
STRINGBGIOSGA019760-PA0.0(Oryza sativa Indica Group)
STRINGLOC_Os05g31420.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP169421011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.14e-32scarecrow-like 3