PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g30720.1
Common NameOsJ_18290
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 665aa    MW: 76404.4 Da    PI: 7.9325
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g30720.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR167.82.8e-2141133190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                       +fY++YA +vGFsvr+ ++kk   +g +  + f C +eg+ e++ ++     +ek++ ++  tr+gC+akl++k+ + +k+++t +e+ H+H+
  LOC_Os05g30720.1  41 EFYESYALRVGFSVRIGQHKKV--DGVVLYKLFLCANEGFWEDKGERglesgSEKRSYEKRITRCGCEAKLVIKLVDGDKYVITGFEQGHTHA 131
                       6*****************9998..*******************9999999988888899*********************************9 PP

              FAR1  89 la 90 
                       ++
  LOC_Os05g30720.1 132 FV 133
                       86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.1E-1841133IPR004330FAR1 DNA binding domain
PfamPF105513.6E-29255347IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 665 aa     Download sequence    Send to blast
MAGRLDFNDV HSDAESVTAD CDDSMVPNIG MTFNGLESAK EFYESYALRV GFSVRIGQHK  60
KVDGVVLYKL FLCANEGFWE DKGERGLESG SEKRSYEKRI TRCGCEAKLV IKLVDGDKYV  120
ITGFEQGHTH AFVSPDKRHL IRSNRKLTLS GRNTLLTCHK ASIGTSQAYR YLRVGVGGFE  180
NVGFTKRDLQ NYHSALRVLI KSSDALMFVD QLSRKSLANP GFYFDYVVDD KGRLIHVFWA  240
DAICRKNYAH FGDLVSFDST YSTNEYGMVF TPFTGVNHHK SSVLFGATML SDETMESYMW  300
LFHTFLKAMG GVAPKLIITD EAASMKAAIR EVLTTTIHRL CMWHILMKVC EKVGPILKED  360
EKFKARLSSC VWSSETPLEF EDEWSCIIYE YGLEDNEWFS TKFDQRRSWV PAYFSDIPLL  420
GLLRTTSRSE SADSFFSRLI GWKLALVEFW LRLDAALEEQ RHKELEEDNI TLHTIRNLKT  480
EWVIEKHAIL RSAQLSELPR YYLLERFRKD CKKTHVFDAD GILLEENTSN SNDPVMQKML  540
SEACNQMEKL ILQAKQSAAA MQLLRDELVV LGDKLNEMVP EKELSQIEEF ESYLGCSIPS  600
QIEIHPPNDT RSRGRIKRIK GHNDKEKKQN KKRKKKERVP RRCKKCKQVM LHDSHNCPNK  660
EPQQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1630634KKRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.183990.0panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329759950.0
Expression AtlasB9FHJ0-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g30720.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g30720
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1047070.0AC104707.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1118_F06, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640678.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLB9FHJ00.0B9FHJ0_ORYSJ; Uncharacterized protein
STRINGLOC_Os05g30720.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-93FAR1-related sequence 5