PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g29810.1
Common NameLOC4338539, Os05g0361700, OSNPB_050361700, P0530H10.12, P0692D12.5
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 199aa    MW: 20772.2 Da    PI: 7.7097
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g29810.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.51.8e-1954102355
               AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+G+r+++ +grW+AeIrdp++    +r++lg++ taeeAa+a++ a++ ++g
  LOC_Os05g29810.1  54 YRGIRRRP-WGRWAAEIRDPRK---GARVWLGTYATAEEAARAYDVAARDIRG 102
                       9*******.**********954...4***********************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.8E-1453102IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-3153110IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-2253111IPR016177DNA-binding domain
PROSITE profilePS5103224.89553110IPR001471AP2/ERF domain
SMARTSM003804.8E-3453116IPR001471AP2/ERF domain
CDDcd000182.42E-2854112No hitNo description
PRINTSPR003673.1E-115465IPR001471AP2/ERF domain
PRINTSPR003673.1E-117692IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009009anatomyplant embryo
PO:0001081developmental stagemature plant embryo stage
PO:0007042developmental stagewhole plant fruit formation stage
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MCGGAIIADF VPPAGARRAA ASDISDNAVL SAAGAGDESF AAAKAPAPGR KTAYRGIRRR  60
PWGRWAAEIR DPRKGARVWL GTYATAEEAA RAYDVAARDI RGAKAKLNFP PTIGAAAAPP  120
PPKKRRKAAA AANHHHHHHQ QESSGSSSAS SLPPTPPPAA EHQLRECMSG LEAFLGLEEE  180
EDDGGAGEPW DAVDMMLE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2054115668ATERF1
3gcc_A1e-2054115668ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122126KKRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.48930.0callus| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329853930.0
Expression AtlasQ6L4M2-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g29810.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g29810
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1001840.0AK100184.1 Oryza sativa Japonica Group cDNA clone:J023031H12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638395.11e-139PREDICTED: ethylene-responsive transcription factor ERF071
SwissprotP427361e-35RAP23_ARATH; Ethylene-responsive transcription factor RAP2-3
TrEMBLA0A0E0HDD21e-139A0A0E0HDD2_ORYNI; Uncharacterized protein
TrEMBLA0A0E0PLD41e-139A0A0E0PLD4_ORYRU; Uncharacterized protein
TrEMBLQ6L4M21e-139Q6L4M2_ORYSJ; Os05g0361700 protein
STRINGLOC_Os05g29810.11e-139(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.15e-20ethylene-responsive element binding protein