PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g27930.1
Common NameB1036C05.12, B1164G01.2, DREB2B, ERF42, LOC4338484, Os05g0346200, OsJ_18158
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 374aa    MW: 40473.1 Da    PI: 4.4881
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g27930.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.91.2e-1887137155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       ++++GVr++  +g+WvAeIr+p   +++ r +lg+f tae Aa a+++a+++++g
  LOC_Os05g27930.1  87 CDFRGVRQRT-WGKWVAEIREP---NQQSRLWLGTFPTAEAAACAYDEAARAMYG 137
                       689****999.**********9...335************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.02E-1787144No hitNo description
PfamPF008471.9E-1287137IPR001471AP2/ERF domain
SMARTSM003807.9E-3588151IPR001471AP2/ERF domain
PROSITE profilePS5103221.27288145IPR001471AP2/ERF domain
PRINTSPR003672.2E-989100IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-2089145IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.1E-3189145IPR001471AP2/ERF domain
PRINTSPR003672.2E-9111127IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009408Biological Processresponse to heat
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009071anatomyanther wall tapetum
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MTVDQRTTAK AIMPPVEMPP VQPGRKKRPR RSRDGPTSVA ETIKRWAELN NQQELDPQGP  60
KKARKAPAKG SKKGCMKGKG GPENTRCDFR GVRQRTWGKW VAEIREPNQQ SRLWLGTFPT  120
AEAAACAYDE AARAMYGPMA RTNFGQHHAP AASVQVALAA VKCALPGGGL TASKSRTSTQ  180
GASADVQDVL TGGLSACEST TTTINNQSDV VSTLHKPEEV SEISSPLRAP PAVLEDGSNE  240
DKAESVTYDE NIVSQQRAPP EAEASNGRGE EVFEPLEPIA SLPEDQGDYC FDIDEMLRMM  300
EADPTNEGLW KGDKDGSDAI LELGQDEPFY YEGVDPGMLD NLLRSDEPAW LLADPAMFIS  360
GGFEDDSQFF EGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-1389144662ATERF1
3gcc_A1e-1389144662ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.77180.0callus| flower| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1166324300.0
Expression AtlasQ5W6R4-
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Involved in drought and heat-shock stress tolerance. {ECO:0000269|PubMed:20049613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g27930.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, high-salt and drought stresses. {ECO:0000269|PubMed:20049613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g27930
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9158430.0JF915843.1 Oryza sativa dehydration responsive element binding protein 2B isoform a (DREB2B) mRNA, complete cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639655.10.0PREDICTED: dehydration-responsive element-binding protein 2B isoform X4
SwissprotQ5W6R40.0DRE2B_ORYSJ; Dehydration-responsive element-binding protein 2B
TrEMBLA0A0E0PL220.0A0A0E0PL22_ORYRU; Uncharacterized protein
TrEMBLJ7FB460.0J7FB46_ORYSA; Dehydration responsive element binding protein 2B isoform a
STRINGLOC_Os05g27930.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
MonocotsOGMP115153037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.27e-29DRE-binding protein 2A
Publications ? help Back to Top
  1. Matsukura S, et al.
    Comprehensive analysis of rice DREB2-type genes that encode transcription factors involved in the expression of abiotic stress-responsive genes.
    Mol. Genet. Genomics, 2010. 283(2): p. 185-96
    [PMID:20049613]