PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g26049.1
Common NameOs05g0326500, Os05g0326800, OsJ_18082, OSNPB_050326500, OSNPB_050326800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 321aa    MW: 34617.8 Da    PI: 7.1051
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g26049.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM26.51.8e-081180170
               NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyat 70
                      l pG++ +P+d+elv + L ++++g++l+l   i e+d +++  Pw+L +  +++ +e +f +k+ + +++
  LOC_Os05g26049.1 11 LLPGLKLDPSDDELVGRCLLRRLQGQPLPLGGDILEADPLSApPPWNLLAD-HGRGDEAFFLAKKGNGKRQ 80
                      579***************************888999987776478***743.3455678877776554332 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.45E-10482IPR003441NAC domain
SuperFamilySSF530982.4E-13151280IPR012337Ribonuclease H-like domain
CDDcd062228.43E-27155276No hitNo description
PROSITE profilePS508799.924155280IPR002156Ribonuclease H domain
PfamPF134563.2E-35156278No hitNo description
Gene3DG3DSA:3.30.420.106.2E-5157279IPR012337Ribonuclease H-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0090502Biological ProcessRNA phosphodiester bond hydrolysis, endonucleolytic
GO:0003677Molecular FunctionDNA binding
GO:0004523Molecular FunctionRNA-DNA hybrid ribonuclease activity
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MAAAAAGADG LLPGLKLDPS DDELVGRCLL RRLQGQPLPL GGDILEADPL SAPPPWNLLA  60
DHGRGDEAFF LAKKGNGKRQ RSSVEGQRMC VDGGRLRVPD DGRGGGGGLA FLPSIFPSPP  120
PVPRCSTPLS PSSPPFKPSR VIVRWWAPPG GWCKLNFDGS VYDDGSRRAS IGGVIRGCDG  180
GVVLAFAEIT EHWTVGVVEA RAMIRGLRLA LACFVERLVV EGDDLVLVQL IRGEETQTRI  240
PAAMHEEILD LLRCFADVEV RHIYREGNSM AHTLCRQAYV HPGLWTDCAT LPAAVWEKID  300
DDLRGVVHER LCNKKKKSSA *
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasB9FGQ2
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g26049.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g26049
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1377480.0AC137748.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0076A09, complete sequence.
GenBankAC1343460.0AC134346.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0018A03, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010230178.21e-85PREDICTED: uncharacterized protein LOC104582380
TrEMBLB9FGQ20.0B9FGQ2_ORYSJ; Os05g0326500 protein
STRINGLOC_Os05g26026.10.0(Oryza sativa Japonica Group)
STRINGLOC_Os05g26049.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2550713