PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g23910.1
Common NameLOC4338359, Os05g0304800, OsJ_17980, OSNPB_050304800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NF-YC
Protein Properties Length: 328aa    MW: 36654.2 Da    PI: 5.0985
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g23910.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC72.56.4e-2331128296
             NF-YC   2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdf 91 
                       ++ fw +    ie ++  ++h lP+  +k++++  +d  m+sa++P++++k celf+ eltlr+w+ a++ +r  +  +dia+a+t t+ + f
  LOC_Os05g23910.1  31 MEEFWRRSqeqIEASAGNHEHILPIDCVKNVIRPKNDAMMLSADTPTFVTKLCELFVQELTLRAWVCANSHNRDIILGTDIAEAITTTESYHF 123
                       7789976523377777778999*********************************************************************** PP

             NF-YC  92 lvdiv 96 
                       l ++ 
  LOC_Os05g23910.1 124 LGNVL 128
                       *8875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.62E-1610124IPR009072Histone-fold
PfamPF008082.6E-853115IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.0E-1753128IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009089anatomyendosperm
PO:0007042developmental stagewhole plant fruit formation stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MAIPTKEEVE QNEEDNTFSR LQLLAQQRHA MEEFWRRSQE QIEASAGNHE HILPIDCVKN  60
VIRPKNDAMM LSADTPTFVT KLCELFVQEL TLRAWVCANS HNRDIILGTD IAEAITTTES  120
YHFLGNVLRS HKALGSTAPD IDTSARKHIK LDQMTSLYHP TQEMQASRLA GYPPHVPIYP  180
PIGQMGTQHK LSPFTFMMQG ESLLNMKREK SLVNEVMVCT NKMSINNFDG ATSIGGGSSS  240
DVAIVVQQGE TTHPFSSQNA CPSLEDNYVV PMPTGHVQSF SPPTNINVKK LHQEEKNIYS  300
QDVAEEDMSN ESLEGSQKDE DLFLHEK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.249360.0flower| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1160115010.0
Expression AtlasQ0DJB5-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g23910.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g23910
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1454760.0AC145476.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone B1023E01, complete sequence.
GenBankAC1365250.0AC136525.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0585E02, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankAK2421360.0AK242136.1 Oryza sativa Japonica Group cDNA, clone: J075149P12, full insert sequence.
GenBankKF7373220.0KF737322.1 Oryza sativa Japonica Group clone KCS267A05 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639189.10.0PREDICTED: uncharacterized protein LOC4338359
TrEMBLA0A0E0PKE50.0A0A0E0PKE5_ORYRU; Uncharacterized protein
TrEMBLQ0DJB50.0Q0DJB5_ORYSJ; Os05g0304800 protein
STRINGLOC_Os05g23910.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1697323
MonocotsOGMP139681528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.22e-18nuclear factor Y, subunit C4