PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g14370.1
Common NameLOC107276056, Os05g0233100, OSNPB_050233100
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 309aa    MW: 34549.6 Da    PI: 7.0287
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g14370.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY621.1e-19147208359
                       -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SS..STTEEEEEEES--SS- CS
              WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversae..dpkvveitYegeHnhe 59 
                       Dg++WrKYGqK++++s++ rsYYrC+++   +C+++k v++ ++  ++ + +++Y g+H+++
  LOC_Os05g14370.1 147 DGHQWRKYGQKNINNSNHQRSYYRCSYKheqNCKATKTVQQLDSagETIMYTVVYYGQHTCK 208
                       9*************************99999*********9766115567899*******97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.1E-22136208IPR003657WRKY domain
SuperFamilySSF1182903.4E-21140209IPR003657WRKY domain
SMARTSM007742.8E-32145209IPR003657WRKY domain
PROSITE profilePS5081114.458147208IPR003657WRKY domain
PfamPF031062.3E-23147208IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MKNKGSSCRY LPHSSAPCAT DGARCFRCDH RPAIDEIVRE QSLVTQLRAV VLPALETKAD  60
DGRAEIVAQL FGSILDCSRK VISALNSRYV GESPPDDDEI VDKRRAKRKN SEGKKGDDQV  120
KVKPHEHKRS RRYTNSTSQI TAVPHYDGHQ WRKYGQKNIN NSNHQRSYYR CSYKHEQNCK  180
ATKTVQQLDS AGETIMYTVV YYGQHTCKTN MSNAPLHVVE TSTTQSISTT CCSDDLGDYS  240
QKMENMHTPE LAEVCSDELG SYHAIIGAEH SALGLEDEHM HKLLDTFACG ALDLDSWEID  300
AIVRSGFC*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasA0A0P0WJL0
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g14370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g14370
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1354200.0AC135420.4 Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0060G17, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638919.10.0PREDICTED: probable WRKY transcription factor 70 isoform X1
TrEMBLA0A0P0WJL00.0A0A0P0WJL0_ORYSJ; Os05g0233100 protein
TrEMBLA2Y7I30.0A2Y7I3_ORYSI; Putative uncharacterized protein
TrEMBLA0A0E0PJB00.0A0A0E0PJB0_ORYRU; Uncharacterized protein
STRINGBGIOSGA017556-PA0.0(Oryza sativa Indica Group)
STRINGLOC_Os05g14370.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1147447
MonocotsOGMP32583079
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.13e-21WRKY DNA-binding protein 70