PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g14130.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 211aa    MW: 21451.5 Da    PI: 6.1506
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g14130.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.000244769123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      y+C  C++ F++   L  H++ H
  LOC_Os05g14130.1 47 YECVFCKRGFTTAQALGGHMNIH 69
                      99*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.68E-64474No hitNo description
PROSITE profilePS5015710.994774IPR007087Zinc finger, C2H2
PROSITE patternPS0002804969IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MDMDDGSSKG SRADESVSSL GTDDHAAAAE PMSSSPPPAT ATARPYYECV FCKRGFTTAQ  60
ALGGHMNIHR RDRAAKPAGP GAAAPPRDAS TTAVSRSVDC YSQFRHLAAA YPVPAATSGA  120
AGTAGSSSSF TMYYGGTGAG AEAAVVAGPR ELSLFDAATD HGLHLGVGRR GGGGDGGESR  180
TPEGSEQQVA GELPERELDL ELRLGRHTKQ *
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g14130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g14130
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1454770.0AC145477.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone B1402B06, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638543.12e-98PREDICTED: uncharacterized protein LOC107275515
TrEMBLA0A0D3G4R61e-149A0A0D3G4R6_9ORYZ; Uncharacterized protein
TrEMBLA2Z6671e-149A2Z667_ORYSI; Uncharacterized protein
TrEMBLI1PTI51e-149I1PTI5_ORYGL; Uncharacterized protein
TrEMBLA0A0D9ZVZ31e-149A0A0D9ZVZ3_9ORYZ; Uncharacterized protein
STRINGBGIOSGA032734-PA1e-149(Oryza sativa Indica Group)
STRINGLOC_Os05g14130.11e-149(Oryza sativa Japonica Group)
STRINGORGLA05G0068300.11e-149(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1198045
MonocotsOGMP81112736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.12e-10C2H2 family protein