PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g11510.1
Common NameLOC4338069, Os05g0204600, OSJNBa0015G13.14, OSNPB_050204600
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family DBB
Protein Properties Length: 379aa    MW: 39399.8 Da    PI: 5.6933
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g11510.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.73.6e-064078537
          zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                       C+ +e  e++  C  ++  lC+ C   +H        H
  LOC_Os05g11510.1 40 LCSACEAAEASVLCCADEAALCARCDRDIHAAnrlagkH 78
                      7******99*********************544555555 PP

2zf-B_box315.1e-10104144337
          zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 
                       ++kC+ ++e ++ +fC +++ llC++C ++ H        H
  LOC_Os05g11510.1 104 PPKCDICQESHAYFFCLEDRALLCRSCDVAVHTAnafvsaH 144
                       789******99*******************99545566666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.1963683IPR000315B-box-type zinc finger
SMARTSM003366.3E-103683IPR000315B-box-type zinc finger
CDDcd000215.22E-54071No hitNo description
SuperFamilySSF578457.32E-599142No hitNo description
SMARTSM003361.4E-15102149IPR000315B-box-type zinc finger
PfamPF006431.4E-8104136IPR000315B-box-type zinc finger
CDDcd000212.90E-9106149No hitNo description
PROSITE profilePS501199.542107149IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009640Biological Processphotomorphogenesis
GO:0005634Cellular Componentnucleus
GO:0000989Molecular Functiontranscription factor activity, transcription factor binding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MSPPPPPYYH HLLLLRSSPT TTGGGARVLA AAELARMKLL CSACEAAEAS VLCCADEAAL  60
CARCDRDIHA ANRLAGKHLR LPLLSPASSS SSSAAALAPP PPSPPKCDIC QESHAYFFCL  120
EDRALLCRSC DVAVHTANAF VSAHRRFLLT GVQVGQEQDE HSPDPPEPSP PPPPPPPASK  180
SDHPAPLYGE GGGGFSWDAA DSPAAGGLPD WSAVVDQFGS PPPPRHTDTA TVTTPPPTKR  240
SPRAPAFGGQ GGMMDWPLGE FFGGFTDFTG GFGFGFGDSG TSKADSGKLG GSTDGSPYYR  300
SSSEDDRNAD ELFGQVPEIQ WSVPELPSPP TASGLHWQRH PAATHGGGGG GPDTTAFVPD  360
ICSPDSCFPA TTSKRRRQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.278170.0flower| leaf| panicle| seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1154625820.0
Expression AtlasQ6ATK0-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g11510.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g11510
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1068650.0AK106865.1 Oryza sativa Japonica Group cDNA clone:002-118-C11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638101.10.0PREDICTED: B-box zinc finger protein 22
TrEMBLA0A0E0PIT30.0A0A0E0PIT3_ORYRU; Uncharacterized protein
TrEMBLQ6ATK00.0Q6ATK0_ORYSJ; Os05g0204600 protein
STRINGLOC_Os05g11510.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP18041634
MonocotsOGMP17943382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.12e-42light-regulated zinc finger protein 1