PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g11380.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family M-type_MADS
Protein Properties Length: 116aa    MW: 12597 Da    PI: 4.4509
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g11380.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.38.6e-283584251
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      +ie++  rqvtf+kR ng+lKKA+ELS LCdaeva+i+fss+g+lyeys+
  LOC_Os05g11380.2 35 SIEDTADRQVTFCKRCNGLLKKAYELSMLCDAEVALIVFSSRGRLYEYSN 84
                      8***********************************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.9E-242685IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.5252686IPR002100Transcription factor, MADS-box
PRINTSPR004047.1E-242848IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.92E-263499IPR002100Transcription factor, MADS-box
PfamPF003198.6E-253682IPR002100Transcription factor, MADS-box
CDDcd002651.70E-3636100No hitNo description
PRINTSPR004047.1E-244863IPR002100Transcription factor, MADS-box
PRINTSPR004047.1E-246384IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    Send to blast
MHIYKEQEAE PSTGLMMPEP APAASPGSGS SEGSSIEDTA DRQVTFCKRC NGLLKKAYEL  60
SMLCDAEVAL IVFSSRGRLY EYSNNSVEET IERYKKANSD TSNTSTVAEI NAQVY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-172794269Myocyte-specific enhancer factor 2B
1tqe_Q1e-172794269Myocyte-specific enhancer factor 2B
1tqe_R1e-172794269Myocyte-specific enhancer factor 2B
1tqe_S1e-172794269Myocyte-specific enhancer factor 2B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.851241e-179flower
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g11380.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g11380
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126131e-113CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
GenBankAC1359201e-113AC135920.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0015G13, complete sequence.
GenBankAP0149611e-113AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638533.17e-80PREDICTED: MADS-box transcription factor 58-like
SwissprotQ2V0P17e-61MAD58_ORYSJ; MADS-box transcription factor 58
TrEMBLB8AZ834e-80B8AZ83_ORYSI; Putative uncharacterized protein
TrEMBLA0A0E0PIS34e-80A0A0E0PIS3_ORYRU; Uncharacterized protein
STRINGLOC_Os05g11380.11e-79(Oryza sativa Japonica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.15e-44MIKC_MADS family protein