PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g10670.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 465aa    MW: 49684.7 Da    PI: 8.8054
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g10670.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.31.2e-08184204526
                       --SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                        C++f++ G Ck+Gd C FaHg
  LOC_Os05g10670.1 184 ACPDFRK-GGCKRGDACEFAHG 204
                       7******.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0013179205IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.159180206IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4184206IPR000571Zinc finger, CCCH-type
PfamPF006429.2E-7184204IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.258214238IPR000571Zinc finger, CCCH-type
SMARTSM0035612214237IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MVRKRRDTAR VNPTAVSGGG LSGLYSRASS SPPLHHSGSR RRLRTNTLPR RSWRRGEELE  60
SKMMMMGEGA HAPPWQQHVA SPVSGVEGGG GRESEVVAAP YHLLDTLRHY LPSNEAAAAE  120
DEEEAAAVAA AVDAYACDEF RMYEFKVRRC ARGRSHDWTE CPFAHPGEKA RRRDPRRYCY  180
SGTACPDFRK GGCKRGDACE FAHGVFECWL HPARYRTQPC KDGTACRRRV CFFAHTPDQL  240
RVLPPSQQQG SNSPRGCGGG GAGAAASPLA ESYDGSPLRR QAFESYLTKS IMSSSPTSTL  300
VSPPRSPPSE SPPLSPDAAG ALRRGAWAGV GSPVNDVHVS LRQLRLGSPR SAPSCASFLP  360
AGYQYGSPKS PAAAAAAALY SLPSTPTRLS PVTVTTASGA TVTVEPLDLG LIEEEQPMER  420
VESGRALREK VFERLSKEAT VSTDAAAAAA GVAPDVGWVS DLIN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.319750.0callus| flower| leaf| panicle| root| stem| vegetative meristem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329916010.0
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g10670.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g10670
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1324860.0AC132486.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0473H02, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640763.10.0PREDICTED: zinc finger CCCH domain-containing protein 35
SwissprotQ6L4N40.0C3H35_ORYSJ; Zinc finger CCCH domain-containing protein 35
TrEMBLA0A0E0PIL50.0A0A0E0PIL5_ORYRU; Uncharacterized protein
STRINGLOC_Os05g10670.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP11701644
MonocotsOGMP15783493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.12e-81C3H family protein