PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g10620.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 358aa    MW: 39112.1 Da    PI: 9.655
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g10620.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM113.42.5e-35572111128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........ 77 
                       +p+G+rF+Ptd+el+ e+L++kv++        ++++ + i+   +i++++P++Lp  v+ +  + +fF++++k+y+tg+rk+r+        
  LOC_Os05g10620.1  57 MPAGVRFDPTDQELI-EHLEAKVKDGGstshplIDEFIHtIQGEdGICYTHPENLP-GVTRDGLSKHFFHRSAKAYPTGTRKRRKvladqqpd 147
                       699************.99******9987777664443344777756**********.555666799******************88******* PP

               NAM  78 ............tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                   +++ +W++tgk++e+++ +g+ +g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  LOC_Os05g10620.1 148 dhpqaskgrnvaAAETRWHKTGKTREITV-RGQPKGCKKILVLYtsFGKKRKAEKTSWVMHQYHL 211
                       *********99877899************.999***********55589**************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-3549230IPR003441NAC domain
PROSITE profilePS5100530.92157230IPR003441NAC domain
PfamPF023652.4E-1658211IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MGAGSIQARM SSDGASGSIG MKHDDGDHRP STGASSRRCP SCGHDPDCNK PFDMVGMPAG  60
VRFDPTDQEL IEHLEAKVKD GGSTSHPLID EFIHTIQGED GICYTHPENL PGVTRDGLSK  120
HFFHRSAKAY PTGTRKRRKV LADQQPDDHP QASKGRNVAA AETRWHKTGK TREITVRGQP  180
KGCKKILVLY TSFGKKRKAE KTSWVMHQYH LGELDDEKEG ELILSKVFYQ TQTRSAAAAE  240
APVSSGAAME VQGQQQQVLK LQADDGHFSS APTKKRLHQD VVAQVKVDRG HHCMPAQRQV  300
NFNLKVTPVP TTSSFPVVVD KQLYSPVALF RSEHLHVGKN FNSSAPKSRL ASPALAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-125521113140Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.881730.0callus| flower| leaf| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g10620.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g10620
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2422270.0AK242227.1 Oryza sativa Japonica Group cDNA, clone: J075175B09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637950.10.0PREDICTED: NAC domain-containing protein 73 isoform X2
SwissprotO494591e-82NAC73_ARATH; NAC domain-containing protein 73
TrEMBLI1PT520.0I1PT52_ORYGL; Uncharacterized protein
STRINGLOC_Os05g10620.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5251585
MonocotsOGMP174251011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.17e-85NAC domain containing protein 75