PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g07120.1
Common NameLOC4337905, Os05g0163900, OSJNBa0027N19.3, OSJNBb0099P06.13, OSNPB_050163900
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 272aa    MW: 29871.8 Da    PI: 9.6186
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g07120.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.71.6e-1170114554
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       h+e+ErrRR+riN  +++Lr++lP a     k ++Ka+ L  +v+ +k+L
  LOC_Os05g07120.1  70 HSEAERRRRERINAHLATLRRILPDA-----KQMDKATLLASVVNQVKHL 114
                       9*************************.....67*************9999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.13265114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-1269123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-1169117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-970114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-1071120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550219.16E-6153209No hitNo description
Gene3DG3DSA:3.30.70.2606.9E-6154205No hitNo description
PROSITE profilePS5167110.394156236IPR002912ACT domain
CDDcd048731.63E-6158193No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0005634Cellular Componentnucleus
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000032anatomytetrad of microspores
PO:0001029developmental stageE tetrad stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MAACQQQIWQ EGKQQQHLHH GGYDDLSSVY RGTVVLPRRQ GGLAPEPPPP RPSSSSGRSA  60
AAQATAMTIH SEAERRRRER INAHLATLRR ILPDAKQMDK ATLLASVVNQ VKHLKTRATE  120
ATTPSTAATI PPEANEVTVQ CYAGGEHTAA ARTYVRATVS CDDRPGLLAD IAATFRRLRL  180
RPLSADMSCL GGRTRHAFVL CREEEEEEDA AAEARPLKEA VRQALAKVAL PETVYGGGGR  240
SKRQRLMMES RYSTAVVHTH VDPQYCWYNS R*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17378ERRRRE
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329958280.0
Expression AtlasQ75IR0-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g07120.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g07120
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1106190.0AK110619.1 Oryza sativa Japonica Group cDNA clone:002-168-H12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638377.10.0PREDICTED: putative transcription factor bHLH107
RefseqXP_015638378.10.0PREDICTED: putative transcription factor bHLH107
RefseqXP_015638379.10.0PREDICTED: putative transcription factor bHLH107
TrEMBLQ75IR00.0Q75IR0_ORYSJ; Os05g0163900 protein
STRINGLOC_Os05g07120.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP37715106
MonocotsOGMP33473678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.11e-17bHLH family protein