PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g06520.1
Common NameLOC107278227, Os05g0157400, OSNPB_050157400
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 85aa    MW: 9395.87 Da    PI: 10.356
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g06520.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.96.4e-071966855
                      HHHHHHHH...HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  8 rErrRRdr...iNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                       ErrR++r   ++ ++e Lr+l+P     +++  s  e L +A +YI  Lq
  LOC_Os05g06520.1 19 KERRRMRRcveVRRKMEALRRLVPGG---GGGEDSGEELLFRAADYIARLQ 66
                      456665543349*************9...9*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.01E-91381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-61781IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-41966IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 85 aa     Download sequence    Send to blast
MPPPASNHGA ACKNSGSNKE RRRMRRCVEV RRKMEALRRL VPGGGGGEDS GEELLFRAAD  60
YIARLQVQVK VMQLMVDVLE QTKD*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasA0A0P0WI61
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g06520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g06520
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126131e-140CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
GenBankAC0874251e-140AC087425.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0676G05, complete sequence.
GenBankAP0149611e-140AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637969.14e-56PREDICTED: transcription factor IBH1-like
TrEMBLA0A0P0WI615e-56A0A0P0WI61_ORYSJ; Os05g0157400 protein
TrEMBLA2Y0L75e-56A2Y0L7_ORYSI; Putative uncharacterized protein
TrEMBLA0A0E0PHT65e-56A0A0E0PHT6_ORYRU; Uncharacterized protein
STRINGBGIOSGA019218-PA1e-55(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1430522
MonocotsOGMP91112126