PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g04820.1
Common NameLOC4337756, myb16, Os05g0140100, OsJ_17058, OSJNBb0111O13.9, OSNPB_050140100
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB
Protein Properties Length: 428aa    MW: 47151.6 Da    PI: 6.567
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g04820.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding551.8e-171461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g W++eEde+l + ++++G g+W+++++  g+ R++k+c++rw +yl
  LOC_Os05g04820.1 14 KGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61
                      678*******************************************97 PP

2Myb_DNA-binding47.15.6e-1567110146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rg++++eE++l++++++ lG++ W+ Ia+ ++ gRt++++k+ w++
  LOC_Os05g04820.1  67 RGAFSQEEEDLIIELHAVLGNR-WSQIAAQLP-GRTDNEIKNLWNS 110
                       89********************.*********.*********9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-27664IPR009057Homeodomain-like
PROSITE profilePS5129418.6961IPR017930Myb domain
SuperFamilySSF466891.24E-2912108IPR009057Homeodomain-like
SMARTSM007175.0E-121363IPR001005SANT/Myb domain
PfamPF002493.4E-151461IPR001005SANT/Myb domain
CDDcd001673.62E-111761No hitNo description
PROSITE profilePS5129425.61562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-2565116IPR009057Homeodomain-like
SMARTSM007175.8E-1366114IPR001005SANT/Myb domain
PfamPF002499.2E-1467110IPR001005SANT/Myb domain
CDDcd001678.76E-1069109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0009733Biological Processresponse to auxin
GO:0010089Biological Processxylem development
GO:0010119Biological Processregulation of stomatal movement
GO:0010214Biological Processseed coat development
GO:0048364Biological Processroot development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009047anatomystem
PO:0007010developmental stagewhole plant fruit ripening stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MGRHSCCYKQ KLRKGLWSPE EDEKLMNHIT KHGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGAF SQEEEDLIIE LHAVLGNRWS QIAAQLPGRT DNEIKNLWNS CIKKKLRQKG  120
IDPNTHKPLT EADRRGAAPT VSTERTSGSS DVNPSSAGAL GNLSHLLSET AQSSMLLPVY  180
DKNHPETASL PRPKVPPKEL FLDQLTAGHE SPSSCRSSGP TLYFPFQQPL GYSNECGTGD  240
GASMNSLWFN QNDFNCSTIS TVMPPVSPSA LSTSMGLNLP PENPRHGGTG IGNTPFYWDG  300
SNPSSSGSTG SSGSNSMGFE PQSTTSILEN SVFPWTDIGQ EKDTRVHLVE ELKWPDLLHG  360
TFAEATTAMQ NQSQSLYDDV IKAESQFNME GICASWFQNQ QPQQQLQAAS DMYDKDLQRL  420
PLSFEHI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-28121165108B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.95140.0flower| leaf| panicle| stem| vegetative meristem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379884840.0
Expression AtlasQ688D6-
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00134DAPTransfer from AT1G09540Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g04820.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g04820
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ9402160.0FJ940216.1 Oryza sativa Japonica Group clone KCS130C10 Myb transcription factor mRNA, complete cds.
GenBankAK1118210.0AK111821.1 Oryza sativa Japonica Group cDNA clone:J023018J24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637582.10.0PREDICTED: transcription factor MYB28
TrEMBLA2Y0820.0A2Y082_ORYSI; Putative uncharacterized protein
TrEMBLA0A0E0H9500.0A0A0E0H950_ORYNI; Uncharacterized protein
TrEMBLQ688D60.0Q688D6_ORYSJ; MYB transcription factor
TrEMBLA0A0E0PH940.0A0A0E0PH94_ORYRU; Uncharacterized protein
STRINGBGIOSGA019160-PA0.0(Oryza sativa Indica Group)
STRINGLOC_Os05g04820.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
MonocotsOGMP23103794
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09540.17e-90myb domain protein 61