PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g04640.1
Common NameOJ1127_B08.14
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 503aa    MW: 52274.4 Da    PI: 7.3131
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g04640.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.63.4e-30249307259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       +Dg++WrKYGqK+ kg+++pr+YYrCt+a +Cpv+k+v+r+aed++++++tYeg+H h+
  LOC_Os05g04640.1 249 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAsQCPVRKQVQRCAEDKSILITTYEGTHSHP 307
                       7***************************99****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.2E-33233309IPR003657WRKY domain
SuperFamilySSF1182901.83E-27241309IPR003657WRKY domain
PROSITE profilePS5081128.185243309IPR003657WRKY domain
SMARTSM007744.3E-35248308IPR003657WRKY domain
PfamPF031061.7E-26250307IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MEMMVQKQRH EEGEEERGGL CAREIKELDF FSAAGAGAGR RDDDDVLRAD GISSSHAGFM  60
VSTALDLLTA VNDGDHHEEK KGQSNIHQSK QMDAAATTVE GELRQAGEEN RRLRRRLEEL  120
TSSYGALYHQ LVQAQQLHTK HQQQAPIAGV QLLDALAAAS PASHRRRAAA AVDGDRTADS  180
DGGEGDENVS PSLGSKRPAA AATLTRLTPE SGSGGENNGG GEQAPAAEMA PCRKARVSVR  240
ARSEAPMISD GCQWRKYGQK MAKGNPCPRA YYRCTMASQC PVRKQVQRCA EDKSILITTY  300
EGTHSHPLPP AAAAMAKTTS AAAAMLLSGP AVSRDALFAA HHHVVAPPPF FHHPYAGSTM  360
ATLSASAPFP TITLDLTQPP PTTTTTAAAA MLQLHRPYAF SSLPFSMYGA GGGSHRPPVV  420
LPPPSSVVET MTAAITRDPN FTTAVAAALS SIMAGGGAQA RTPPRGGSDA AGDINGGGGA  480
DHATAGARAA AAATQPCGTS PT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-21235311176WRKY transcription factor 1
2lex_A5e-21239309877Probable WRKY transcription factor 4
1wj2_A5e-21239309877Probable WRKY transcription factor 4
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ75L34
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g04640.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g04640
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638124.10.0PREDICTED: probable WRKY transcription factor 47 isoform X1
TrEMBLQ75L340.0Q75L34_ORYSJ; WRKY transcription factor 5
STRINGLOC_Os05g04640.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
MonocotsOGMP43583260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.12e-43WRKY family protein