PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g03090.1
Common NameOJ1001_G01.16, OJ1729_E02.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 941aa    MW: 108151 Da    PI: 6.6667
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g03090.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR173.73.9e-23430528191
              FAR1   1 kfYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtklele 84 
                       +++n+YA+++GFs+++ +s ++   krn+e+++ tf+C+k+ k++ ++k       ++ er+t+++  t+Ck+ ++++++ + +w +t+l+l+
  LOC_Os05g03090.1 430 NYFNFYAYMAGFSIVNVHSARTtskKRNREVIRVTFKCYKYVKADCNTKPetvdetATGERKTNEVIGTECKCVMVISER-NLEWIITRLDLD 521
                       59**************99998888899******************9999899999889999******************9.9*********** PP

              FAR1  85 HnHelap 91 
                       HnHel+p
  LOC_Os05g03090.1 522 HNHELSP 528
                       *****86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.5E-23430528IPR004330FAR1 DNA binding domain
PROSITE profilePS5096610.398665701IPR007527Zinc finger, SWIM-type
PfamPF044342.8E-6665700IPR007527Zinc finger, SWIM-type
SMARTSM005751.3E-7676703IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 941 aa     Download sequence    Send to blast
MEINEKIDDR EANLQYTQKG ITSLSDLEKE KGEEQEKSTD SGKKSQGLKI MKQLAGKIEA  60
GTSTDSVNSK SGTEEKILKI SNDLKKADEK QLQEVKTSRG FETDTDKKAQ RFKTMKQLPG  120
IFEDGTCTAL VQSNSGLAFL EKNYNTTQSY KMQENRDNIK SGNKGHLSDI GSKIEKKNTT  180
NQTCLALLEE NYNTTLSYRV QENMDITKTG KGKIMKQIAG NSKDFSETEA KLDKTKNSEA  240
DIGCSALNES EKSIIENNDK GTISCMNMQE INSENGANNA KVDYENNVLS LLDQDYIADS  300
FISYTSLMEH IISSQPKRCN ELKDKSLEQT SEIGYSNVDN QSQHAWSLDI FNLQESVQEP  360
ILEQSSDIGN ISGNGVDDDV MNDELLTEED IEQFLEEEQQ EALKGNNAII DRKYIPELDQ  420
KFKSIIEAHN YFNFYAYMAG FSIVNVHSAR TTSKKRNREV IRVTFKCYKY VKADCNTKPE  480
TVDETATGER KTNEVIGTEC KCVMVISERN LEWIITRLDL DHNHELSPPN KVRFLRSHKY  540
LSTEERVLIR TLKECHIPTR NMIVILSVLR GGLTSLPYTK KDISNVRTEI NRETSSNDMM  600
QCLTYLKKKQ EKDPNFFYEF DLDENRKAQL RKTLELQVEE IKKFKCYAVF EAENVISKQI  660
RKRKYLVMMD LDTEEYTCIC AMFQKDGILC SHILKIMLHL SIKEIPEKYI MHRWRKNHKS  720
TEIIIGKEII PVSESSVLRF NILSRKFAEI ASKGAKTVEA YKFLMEESEK IDEKLNTMFS  780
HEFEGADKQQ GHEENNSFSP TAEVNEKSEN THIHGDIRNE EDYIEDPDIA NSKGRPKQRY  840
KTIREQIEDK ETNHCSHCGR TEHTFPTCPF KHIEFDLARK RKRKIPSKPQ KSGEEEKKEA  900
TSKKRKPNKK ENTEISKSHQ DEVQQLSKRV KKKSEINTSK *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1878883RKRKRK
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ75L92
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g03090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g03090
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0930890.0AC093089.1 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1729_E02, complete sequence.
GenBankAC0930880.0AC093088.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1001_G01, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649296.13e-98PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLQ75L920.0Q75L92_ORYSJ; Uncharacterized protein
STRINGLOC_Os05g03090.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.14e-16FAR1-related sequence 11