PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g03040.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family AP2
Protein Properties Length: 362aa    MW: 40079.9 Da    PI: 7.1519
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g03040.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2544e-17170219155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  LOC_Os05g03040.2 170 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 219
                       78*******************......55************************997 PP

2AP230.49.9e-10262303146
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaa 46 
                       s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa++ 
  LOC_Os05g03040.2 262 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARLS 303
                       89********.7******5553..2.26**********99***986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.17E-16170228IPR016177DNA-binding domain
PfamPF008473.7E-9170219IPR001471AP2/ERF domain
CDDcd000182.32E-11171229No hitNo description
SMARTSM003802.4E-32171233IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-17171228IPR001471AP2/ERF domain
PROSITE profilePS5103217.596171227IPR001471AP2/ERF domain
SuperFamilySSF541715.56E-9262303IPR016177DNA-binding domain
CDDcd000183.32E-13262301No hitNo description
PfamPF008471.3E-5262304IPR001471AP2/ERF domain
SMARTSM003801.0E-6263318IPR001471AP2/ERF domain
PROSITE profilePS510328.913263301IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-5263301IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MELDLNNVAE GVVEKHETAA RSDSGTSESS VLNGEASGAA IAPAEEGSSS TPPSPPPPPA  60
AVLEFSILRS SASASGENDA DDDEEEEATP SPPPHHQHQQ LLVTRELFPS AAPSPQHWAE  120
LGFLRPDPPR PHPDIRILAH APPPAPPPPP PQPQPQAAKK SRRGPRSRSS QYRGVTFYRR  180
TGRWESHIWD CGKQVYLGGF DTAHAAARAY DRAAIKFRGV EADINFNLSD YEEDMRQMKS  240
LSKEEFVHVL RRQSTGFSRG SSKYRGVTLH KCGRWEARMG QFLGKKYIYL GLFDSEVEAA  300
RLSSAWILFS CTIDSNQKKV FSFLKFYFLV LLIFDGPCTD SNLLSFFFSS FFSSRFKHQG  360
L*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.616450.0callus| flower| leaf| panicle| root| seed| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g03040.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g03040
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6851170.0AY685117.1 Oryza sativa (japonica cultivar-group) transcription factor AP2D23-like (AP2D23) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639329.10.0PREDICTED: AP2-like ethylene-responsive transcription factor TOE3 isoform X1
SwissprotP479278e-80AP2_ARATH; Floral homeotic protein APETALA 2
TrEMBLQ2TQ340.0Q2TQ34_ORYSJ; Os05g0121600 protein
TrEMBLB9FM730.0B9FM73_ORYSJ; Uncharacterized protein
STRINGLOC_Os05g03040.10.0(Oryza sativa Japonica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.39e-77related to AP2.7