PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g01256.1
Common NameLOC4337537, Os05g0103000, OsJ_16787, OSNPB_050103000, P0036D10.20, P0668H12.5
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 340aa    MW: 36829.9 Da    PI: 6.502
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g01256.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.55.7e-09190237455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + + Y++sLq
  LOC_Os05g01256.1 190 SHSLAERVRREKISERMKMLQSLVPGC----DKVTGKALMLDEIISYVQSLQ 237
                       8*************************9....555*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.09E-17184256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.75E-11184241No hitNo description
PROSITE profilePS5088815.675186236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-17186257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-6190237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-10192242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009030anatomycarpel
PO:0007130developmental stagesporophyte reproductive stage
PO:0007606developmental stagegynoecium development stage
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MESLCGQLEH EHEQQLHQSS SSSLLPYCFL SAPEPLPVPG FPAGCSNLEE KAAAAMAAYE  60
YESSSCSSLD PTSMPMVYSP IVLQPQECPL SFVFDNAAAA AGDNKWVPGI QGSCPCSLGS  120
TQDMDASWGK SRKHKRSNVG LKGLEEKKAR RVVLHQHDDD VKKKAKEAAG GEPPAGYIHV  180
RARRGQATDS HSLAERVRRE KISERMKMLQ SLVPGCDKVT GKALMLDEII SYVQSLQNQV  240
EFLSMKLASL SPLMYEFGPG IDMHPDVLRQ LAKMPHEMVQ CMGQMGSTGI SLQGLGGGPT  300
GFAQDGSSHI NMVVMQVGEQ GQQQGSLHQV EMSSHCFFH*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.230820.0leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329758820.0
Expression AtlasQ75M33-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g01256.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g01256
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0658640.0AK065864.1 Oryza sativa Japonica Group cDNA clone:J013044E05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640735.10.0PREDICTED: transcription factor bHLH63
RefseqXP_015640734.10.0PREDICTED: transcription factor bHLH63
RefseqXP_015640733.10.0PREDICTED: transcription factor bHLH63
RefseqXP_015640732.10.0PREDICTED: transcription factor bHLH63
RefseqXP_015640731.10.0PREDICTED: transcription factor bHLH63
SwissprotQ93W883e-53BH137_ARATH; Transcription factor bHLH137
TrEMBLQ75M330.0Q75M33_ORYSJ; BHLH transcription factor
STRINGLOC_Os05g01256.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5816313
MonocotsOGMP167931212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.21e-48bHLH family protein