PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g59470.1
Common NameOs04g0691300, OSNPB_040691300
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 286aa    MW: 31658.5 Da    PI: 6.3361
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g59470.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM151.15.3e-4791432128
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeek..ewyfFskrdkkya....tgkrknratksgyWkatgk 88 
                       +pGfrFhPt+eelv +yL++kv g++ +   +i+evd++++ePwdL  +++++++   +yfFs +d+ky+    tg+r+nrat++g+Wkatg+
  LOC_Os04g59470.1   9 APGFRFHPTEEELVGYYLARKVVGQQDDG--IIQEVDLNSIEPWDLL-QAQQHDQeyYCYFFSYKDRKYPsargTGTRTNRATAAGFWKATGR 98 
                       79************************666..8**************7.34444441366**********98888899**************** PP

               NAM  89 dkevlsk..kgel.....vglkktLvfykgrapkgektdWvmheyrl 128
                       dk+vls+  +        +g++ktLvfy+grap+g ktdW++heyrl
  LOC_Os04g59470.1  99 DKPVLSSsrS--SsspavIGMRKTLVFYRGRAPNGCKTDWIIHEYRL 143
                       ******8551..245556***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.4E-495163IPR003441NAC domain
PROSITE profilePS5100551.0688163IPR003441NAC domain
PfamPF023655.4E-2510143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MEEEWCCVAP GFRFHPTEEE LVGYYLARKV VGQQDDGIIQ EVDLNSIEPW DLLQAQQHDQ  60
EYYCYFFSYK DRKYPSARGT GTRTNRATAA GFWKATGRDK PVLSSSRSSS SPAVIGMRKT  120
LVFYRGRAPN GCKTDWIIHE YRLVAHHQQP DGSCWVVCRA FHKPTTTTLQ HQLHLHRPAP  180
LLHHPGYYDD QYLYPPPAAA AGGGGLLCSP ALDMELEDEE DESKMMILSN DNIPLVVSPT  240
AVHTQGTGGD IINDATTAPA AAAAADHRRH LAPPPPLHLL ANSVD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-39816315168Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasA0A0P0WGZ5
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g59470.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g59470
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankAL6066560.0AL606656.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0020J19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635310.10.0PREDICTED: NAC domain-containing protein 105-like
SwissprotQ9FH596e-61NC105_ARATH; NAC domain-containing protein 105
TrEMBLA0A0P0WGZ50.0A0A0P0WGZ5_ORYSJ; Os04g0691300 protein (Fragment)
STRINGLOC_Os04g59470.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
MonocotsOGMP1902799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66300.12e-48NAC domain containing protein 105