PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g57600.1
Common NameLOC4337362, Os04g0671800, OsJ_015854, OSJNBb0004A17.5
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 712aa    MW: 80160 Da    PI: 5.2362
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g57600.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.43.9e-06116138427
                       ---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                       ++C +f + G C  GdrC F Hgp
  LOC_Os04g57600.1 116 VPCYYFKK-GNCLKGDRCAFYHGP 138
                       689*9999.*************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.9533160IPR000571Zinc finger, CCCH-type
SMARTSM003560.00643259IPR000571Zinc finger, CCCH-type
PfamPF156631.9E-113388No hitNo description
PROSITE profilePS5010310.9916288IPR000571Zinc finger, CCCH-type
SMARTSM003560.456487IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.502112139IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-5113138IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.77E-5113137IPR000571Zinc finger, CCCH-type
PfamPF146081.5117137No hitNo description
Gene3DG3DSA:4.10.1000.107.3E-5117139IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009089anatomyendosperm
PO:0007042developmental stagewhole plant fruit formation stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 712 aa     Download sequence    Send to blast
MEADGAAAAA AAGEASTEAG ARPLAPEEEA LRRNTDCVYF LASPLTCKKG NECDFRHSDN  60
ARMNPRDCWY WLNSNCLNPK CPFRHPPIDG MFGAPTTGMP AVSSHYAPFN SGKQLVPCYY  120
FKKGNCLKGD RCAFYHGPQS VGNNPSEQVV KVSSLPLEQL QTQKNDLLGI KDSVQSTNSI  180
QHGAPITNER GKTAVDRSTV NSARTATVAI PVASNAMSCP KSEKVKSSTP AALKESFTTS  240
SGGDHPECYQ NHFPMDSDPV RDWNQSYEMP PADDLPQNSR EADELLGESS PGFDVLVDND  300
ADGAAYLHDE DFGGDMYPVE DYEYAPADFD VRAHHERERF NGMDEQDQMG HMYDGYERKR  360
RRSSERSMER PFHSERRFLQ RDRDRVEMDG SDLRHRLRRR RINESSLAIS PERNGEQRRR  420
DERYRERAHG HRSHRDHHQS SRGSTLSSRL QGRIKLPGRS PDRVDTRSEK ERDRRRLRDR  480
LSPVRRTEFQ GTRHREAGQH EEQTQRRSSE LALGSRNADG QHLTKDVPDS HNFPHRKNSR  540
DSSKANGSVE PEASLDFEGP KPLSVILQRK REAAWANGTS ACSPKQDKSA EVSHRQASLA  600
EAEKEGDNII SSDEYKSGSG DEEFRDEGHI PVEGHGQSSS HGDKLEAEDI IEVDPVENQD  660
ADNYDQREGE SYYEPIEGQD YKSDDENAYE DDDEEYDDDD DFARKVGVVF S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1357361RKRRR
2357362RKRRRS
3473480RRRLRDRL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.122160.0callus| flower| leaf| panicle| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329808800.0
Expression AtlasQ0J952-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g57600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g57600
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0708570.0AK070857.1 Oryza sativa Japonica Group cDNA clone:J023066C11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636581.10.0PREDICTED: zinc finger CCCH domain-containing protein 32
SwissprotQ0J9520.0C3H32_ORYSJ; Zinc finger CCCH domain-containing protein 32
TrEMBLF1DK830.0F1DK83_ORYSJ; C3H-related transcription factor (Fragment)
STRINGLOC_Os04g57600.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP24551220
MonocotsOGMP66043241
Publications ? help Back to Top
  1. Wang D, et al.
    Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.
    BMC Genomics, 2008. 9: p. 44
    [PMID:18221561]