PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g57340.1
Common NameLOC4337341, Os04g0669200, OSJNBa0043A12.18, OSNPB_040669200
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 191aa    MW: 19890.5 Da    PI: 9.3677
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g57340.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.5e-191363155
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      ++y+GVr ++ +gr++AeIrdp +   r+r++lg++++ae Aa+a++ a+++l+g
  LOC_Os04g57340.1 13 PRYRGVRKRP-WGRFAAEIRDPAK---RARVWLGTYDSAEAAARAYDVAARNLRG 63
                      68********.**********843...6*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.8E-141363IPR001471AP2/ERF domain
CDDcd000185.26E-201371No hitNo description
SuperFamilySSF541716.21E-221472IPR016177DNA-binding domain
PROSITE profilePS5103224.0391471IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.6E-311472IPR001471AP2/ERF domain
SMARTSM003801.0E-351477IPR001471AP2/ERF domain
PRINTSPR003673.7E-101526IPR001471AP2/ERF domain
PRINTSPR003673.7E-103753IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009037anatomylemma
PO:0001047developmental stagelemma development stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MVGGEVMCEA AAPRYRGVRK RPWGRFAAEI RDPAKRARVW LGTYDSAEAA ARAYDVAARN  60
LRGPLARTNF PLVSSLPLPS PHYHLPGKAA AAAPPVAGPA CSASSTVESS SGPRGPRPAA  120
TAAAVPRRRV PRPAPPAPDA GCHSDCASSA SVVDDADDAS TVRSRVAAFD LNLPPPLDRD  180
HVDLCTDLRL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A1e-201072164ATERF1
2gcc_A1e-201072164ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.193620.0callus| flower| leaf| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ7XR67
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00194DAPTransfer from AT1G50640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g57340.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g57340
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankAL7323460.0AL732346.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0818H01, complete sequence.
GenBankAL7323400.0AL732340.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: B0811B10, complete sequence.
GenBankAL6066190.0AL606619.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0043A12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634065.11e-129PREDICTED: ethylene-responsive transcription factor 7
SwissprotO803393e-33ERF82_ARATH; Ethylene-responsive transcription factor 3
TrEMBLA0A0E0H7741e-129A0A0E0H774_ORYNI; Uncharacterized protein
TrEMBLA0A0E0PFF61e-129A0A0E0PFF6_ORYRU; Uncharacterized protein
TrEMBLQ259P71e-129Q259P7_ORYSA; B0811B10.20 protein
TrEMBLQ7XR671e-129Q7XR67_ORYSJ;
STRINGLOC_Os04g57340.11e-129(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
MonocotsOGMP51232758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20310.11e-21ethylene response factor 7