PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g57010.1
Common NameLOC4337319, Os04g0665700, OsJ_16534, OSJNBa0087O24.9
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 310aa    MW: 31787.8 Da    PI: 9.8875
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g57010.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.42.5e-08105130227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       kt+ C  +     Ck+Gd+C+FaHg+
  LOC_Os04g57010.1 105 KTRMCTKYNTAEGCKFGDKCHFAHGE 130
                       9***********************96 PP

2zf-CCCH38.12.6e-12276301127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       ykt+lC +f + GtC +GdrC+FaHg+
  LOC_Os04g57010.1 276 YKTKLCENFVK-GTCTFGDRCHFAHGE 301
                       9**********.*************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.233765IPR000571Zinc finger, CCCH-type
SMARTSM0035663764IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-53862IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.1E-63962IPR000571Zinc finger, CCCH-type
PfamPF146080.494562No hitNo description
PROSITE profilePS5010313.892103131IPR000571Zinc finger, CCCH-type
SMARTSM003560.046103130IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-8104134IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-13104135IPR000571Zinc finger, CCCH-type
PfamPF006429.6E-5105130IPR000571Zinc finger, CCCH-type
SuperFamilySSF547912.73E-14170245IPR004088K Homology domain, type 1
SMARTSM003229.7E-11174244IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.102.7E-15174244IPR004088K Homology domain, type 1
PROSITE profilePS5008414.529175239IPR004088K Homology domain, type 1
PfamPF000131.6E-10177239IPR004088K Homology domain, type 1
CDDcd001053.14E-14177239No hitNo description
Gene3DG3DSA:4.10.1000.105.7E-15274305IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-9274305IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.488275302IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-8275301IPR000571Zinc finger, CCCH-type
PfamPF006428.6E-10276301IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009049anatomyinflorescence
PO:0001083developmental stageinflorescence development stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MEGAGAARKR SRPDTANGGA AGGKRSRETE SFQTGLSSKL KPCTKFFSTI GCPFGEGCHF  60
SHFVPGGYQA VAKTLNLGNP AVPAPARAPM DHAAGGNSHP ASSGKTRMCT KYNTAEGCKF  120
GDKCHFAHGE RELGKPAYMS HESAMAPPMG GRYGGRPEPP PPAAMGPPAG NFGASATAKI  180
SVDASLAGGI IGKGGVNTKQ ICRVTGVKLS IRDHESDSNL KNIELEGNFD QIKQASNMVG  240
ELIATISPST PAKKPAGSAA GAAPAGRGGP GGRSNYKTKL CENFVKGTCT FGDRCHFAHG  300
ENEQRKGAA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.58100.0callus| flower| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379915740.0
Expression AtlasQ7XPK1-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g57010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g57010
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8338350.0CT833835.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA025P11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636567.10.0PREDICTED: zinc finger CCCH domain-containing protein 31
SwissprotQ7XPK10.0C3H31_ORYSJ; Zinc finger CCCH domain-containing protein 31
TrEMBLB8AVZ70.0B8AVZ7_ORYSI; Putative uncharacterized protein
TrEMBLQ01MN30.0Q01MN3_ORYSA; H1005F08.11 protein
STRINGLOC_Os04g57010.10.0(Oryza sativa Japonica Group)
STRINGBGIOSGA017313-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP10261756
MonocotsOGMP125438127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.12e-50C3H family protein
Publications ? help Back to Top
  1. Wang D, et al.
    Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.
    BMC Genomics, 2008. 9: p. 44
    [PMID:18221561]