PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g55970.2
Common NameOsJ_16445, OSJNBb0022F16.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family AP2
Protein Properties Length: 493aa    MW: 53180.8 Da    PI: 6.0537
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g55970.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.81e-11143199155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  LOC_Os04g55970.2 143 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 199
                       57*******************5444.2455536655.779999**************98 PP

2AP252.21.5e-16242293155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s y+GV+++++ grW A+I  +     +k  +lg+fgt+eeAa+a++ a+ k++g
  LOC_Os04g55970.2 242 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFGTEEEAAEAYDIAAIKFRG 293
                       57****************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.5E-9143199IPR001471AP2/ERF domain
CDDcd000183.13E-18143209No hitNo description
SuperFamilySSF541717.85E-15143208IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.2E-12144208IPR001471AP2/ERF domain
PROSITE profilePS5103217.57144207IPR001471AP2/ERF domain
SMARTSM003801.6E-22144213IPR001471AP2/ERF domain
PRINTSPR003677.8E-6145156IPR001471AP2/ERF domain
PfamPF008473.2E-11242293IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-17242302IPR016177DNA-binding domain
CDDcd000189.84E-24242302No hitNo description
PROSITE profilePS5103219.137243301IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-17243301IPR001471AP2/ERF domain
SMARTSM003803.0E-32243307IPR001471AP2/ERF domain
PRINTSPR003677.8E-6283303IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MDMDTSHHYP WLNFSLAHHC EMEEEERGAA AELAAIAGAA PPPKLEDFLG GGCNGGSSGG  60
ACPPVQTTAP TAAELYESEL KFLAAGFQLS GAAGAAPPVP ALLPAAALEQ TDETKQLALP  120
PQAAVAPPPE QKKAVDSFGQ RTSIYRGVTR HRWTGRYEAH LWDNSCRREG QSRKGRQGGY  180
DKEEKAARAY DLAALKYWGP STTTNFPVAE YEKELEEMKH MTRQEFVASL RRKSSGFSRG  240
ASIYRGVTRH HQHGRWQARI GRVAGNKDLY LGTFGTEEEA AEAYDIAAIK FRGLNAVTNF  300
EIGRYNVESI ISSNLPIGSM AGNRSTKAGL ELAPSSSADA IAATEANHTG VAPPSTLAFT  360
ALPMKYDQAD YLSYLALQHH QQGNLQGLGF GLYSSGVNLD FANANGNGAM SNCYTNVSLH  420
EQQQQHQHQH QQEQQQDQQD DQSQSSNNSC GSIPFATPIA FSGSYESSMT AAGTFGYYPN  480
VAAFQTPIFG ME*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.95970.0callus| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO213042240.0
Expression AtlasQ7XTE2-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g55970.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g55970
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0621790.0AY062179.1 Oryza sativa aintegumenta-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633701.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ31e-134AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLQ8LGQ40.0Q8LGQ4_ORYSA; Aintegumenta-like protein
TrEMBLA0A0E0PF080.0A0A0E0PF08_ORYRU; Uncharacterized protein
TrEMBLQ7XTE20.0Q7XTE2_ORYSJ;
STRINGBGIOSGA017263-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP11217209
MonocotsOGMP79738151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-119AINTEGUMENTA-like 5