PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g55970.1
Common NameOsJ_16445, OSJNBb0022F16.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family AP2
Protein Properties Length: 276aa    MW: 29841.8 Da    PI: 6.7413
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g55970.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.46.3e-172576155
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      s y+GV+++++ grW A+I  +     +k  +lg+fgt+eeAa+a++ a+ k++g
  LOC_Os04g55970.1 25 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFGTEEEAAEAYDIAAIKFRG 76
                      57****************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-112576IPR001471AP2/ERF domain
SuperFamilySSF541714.12E-182585IPR016177DNA-binding domain
CDDcd000183.37E-252585No hitNo description
SMARTSM003803.0E-322690IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.7E-182684IPR001471AP2/ERF domain
PROSITE profilePS5103219.1372684IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MKHMTRQEFV ASLRRKSSGF SRGASIYRGV TRHHQHGRWQ ARIGRVAGNK DLYLGTFGTE  60
EEAAEAYDIA AIKFRGLNAV TNFEIGRYNV ESIISSNLPI GSMAGNRSTK AGLELAPSSS  120
ADAIAATEAN HTGVAPPSTL AFTALPMKYD QADYLSYLAL QHHQQGNLQG LGFGLYSSGV  180
NLDFANANGN GAMSNCYTNV SLHEQQQQHQ HQHQQEQQQD QQDDQSQSSN NSCGSIPFAT  240
PIAFSGSYES SMTAAGTFGY YPNVAAFQTP IFGME*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.95970.0callus| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO213042240.0
Expression AtlasQ7XTE2-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g55970.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g55970
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0621790.0AY062179.1 Oryza sativa aintegumenta-like protein mRNA, complete cds.
GenBankAK1118910.0AK111891.1 Oryza sativa Japonica Group cDNA clone:J033072A06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633701.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ33e-63AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLQ8LGQ40.0Q8LGQ4_ORYSA; Aintegumenta-like protein
TrEMBLA0A0E0PF080.0A0A0E0PF08_ORYRU; Uncharacterized protein
TrEMBLQ7XTE20.0Q7XTE2_ORYSJ;
TrEMBLA0A0D9ZRR60.0A0A0D9ZRR6_9ORYZ; Uncharacterized protein
STRINGLOC_Os04g55970.10.0(Oryza sativa Japonica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-58AINTEGUMENTA-like 5