PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g55560.2
Common NameOsJ_16420
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family AP2
Protein Properties Length: 461aa    MW: 48499.5 Da    PI: 7.0458
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g55560.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.65.7e-17110159155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  LOC_Os04g55560.2 110 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 159
                       78*******************......55************************997 PP

2AP246.41e-14202252155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV+ +k  grW+A+   +     +k+++lg f+t+eeAa+a+++a+ k +g
  LOC_Os04g55560.2 202 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEEEAARAYDRAAIKCNG 252
                       89********.7******5553..2.26**********************99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.15E-16110168IPR016177DNA-binding domain
PfamPF008475.2E-9110159IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-17111167IPR001471AP2/ERF domain
SMARTSM003801.8E-31111173IPR001471AP2/ERF domain
PROSITE profilePS5103217.701111167IPR001471AP2/ERF domain
PfamPF008471.0E-10202252IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-18202262IPR016177DNA-binding domain
CDDcd000182.55E-25202262No hitNo description
Gene3DG3DSA:3.30.730.102.4E-17203260IPR001471AP2/ERF domain
SMARTSM003803.0E-33203266IPR001471AP2/ERF domain
PROSITE profilePS5103216.489203260IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0010093Biological Processspecification of floral organ identity
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MWDLNDSPAA EAAPPPLSPS ADDSGASSSS AAAVVEIPDD ADDDSAAVVV VTRQFFPPAV  60
PGGGGDPAPG NARAGWLRLA GAAPPVAATG PAASAAVSKK SRRGPRSRSS QYRGVTFYRR  120
TGRWESHIWD CGKQVYLGGF DTAHAAARAY DRAAIKFRGV EADINFSLED YEDDLKQMSN  180
LTKEEFVHVL RRQSTGFPRG SSKYRGVTLH KCGRWEARMG QFLGKKYVYL GLFDTEEEAA  240
RAYDRAAIKC NGKDAVTNFD PSIYAGEFEP PAAATGDAAE HNLDLSLGSS AGSKRGNVDG  300
GGDDEITGGG GGGAGSDQRV PMAFDLDWQT AAARSTKAKF DQNSNHPQMP PVLQVTHLPF  360
SPRHHHQFLS NGDPGTAGGL SLTIGAGMAG HWPPQQQQGW GNAGGMSWPH PPHPPPPPTN  420
AAAAATATAA AASSRFPPYI ATQASTWLQK NGFHSLTRPT *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.593061e-156callus| flower| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329852001e-156
Expression AtlasB9FCV0-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g55560.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g55560
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822800.0FO082280.1 Oryza rufipogon (W1943) shattering abortion 1(SHAT1) gene: OR_W1943_CDS_SHAT1, PCR product.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636848.10.0PREDICTED: AP2-like ethylene-responsive transcription factor TOE3 isoform X1
SwissprotP479271e-116AP2_ARATH; Floral homeotic protein APETALA 2
TrEMBLB9FCV00.0B9FCV0_ORYSJ; Uncharacterized protein
STRINGLOC_Os04g55560.20.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4971784
MonocotsOGMP55143658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.22e-90AP2 family protein