PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g52770.1
Common NameLOC4337015, Os04g0618600, OsJ_16185, OSJNBa0058K23.6, OSNPB_040618600
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 182aa    MW: 21053.9 Da    PI: 9.9689
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g52770.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.78.8e-181763455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                       hn  ErrRRdriN+++  L+ellP++     +K +K+++L +A++Y+ksLq
  LOC_Os04g52770.1 17 FHNFSERRRRDRINEKLKALQELLPNC-----TKTDKVSMLDEAIDYLKSLQ 63
                      59*************************.....9******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.109.4E-201070IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.5271362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-211689IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.74E-171667No hitNo description
PfamPF000104.8E-151863IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-181968IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009009anatomyplant embryo
PO:0001081developmental stagemature plant embryo stage
PO:0007042developmental stagewhole plant fruit formation stage
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MEARRPTPTR RSRSAEFHNF SERRRRDRIN EKLKALQELL PNCTKTDKVS MLDEAIDYLK  60
SLQLQLQMLV MGKGMAPVVP PELQQYMHYI TADPSQIPPI RPSEPRPFQI THATQQRQSN  120
VESDFLSQMQ NLHPSEPPQN FLRPPKLQLY TPEQQRRGLA SSSGHNSGWI TERNSSYNFL  180
E*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12126ERRRRD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.45480.0callus| leaf
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329918980.0
Expression AtlasQ7FA23-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g52770.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g52770
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1066890.0AK106689.1 Oryza sativa Japonica Group cDNA clone:002-114-C05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634980.11e-132PREDICTED: transcription factor PIF1
RefseqXP_015634979.11e-132PREDICTED: transcription factor PIF1
RefseqXP_015634978.11e-132PREDICTED: transcription factor PIF1
SwissprotQ8GZM75e-30PIF1_ARATH; Transcription factor PIF1
TrEMBLB8AUF91e-132B8AUF9_ORYSI; Putative uncharacterized protein
TrEMBLI1PPY91e-132I1PPY9_ORYGL; Uncharacterized protein
TrEMBLQ7FA231e-132Q7FA23_ORYSJ;
STRINGLOC_Os04g52770.11e-132(Oryza sativa Japonica Group)
STRINGBGIOSGA017139-PA1e-132(Oryza sativa Indica Group)
STRINGORGLA04G0225800.11e-132(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP25816128
MonocotsOGMP95623043
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.11e-26phytochrome interacting factor 3-like 5